You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I acknoledge that picard can be difficult to track with its two commandline standards and multiple ways of invoking commands, but I still think that the following actions are worth taking:
Allow all metrics files generated by "CollectMultipleMetrics" to be processed:
Currently RnaSeqMetrics are not properly identified when obtained from CollectMultipleMetrics. if I delete the first two lines of the file (and use picard_config:s_name_filenames:true the metrics file is processed.
Same for QualityScoreDistributionMetrics
Develop a submodule for CollectSequencingArtifactsMetrics. The only artifact that is currently allowed is oxoG which cannot be generated with CollectMultipleMetrics (but can be transformed by ConvertSequencingArtifactToOxoG)
Description of bug
I acknoledge that picard can be difficult to track with its two commandline standards and multiple ways of invoking commands, but I still think that the following actions are worth taking:
picard_config:s_name_filenames:true
the metrics file is processed.File that triggers the error
NAME.CollectMultipleMetrics.rna_metrics.txt
MultiQC Error log
Before submitting
The text was updated successfully, but these errors were encountered: