You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Copy file name to clipboardExpand all lines: README.md
+6-1Lines changed: 6 additions & 1 deletion
Original file line number
Diff line number
Diff line change
@@ -38,7 +38,7 @@ tomotools [subcommand] --help
38
38
-**update**: Automatically pulls the most recent version from GitHub and runs ```pip install --upgrade``` on it.
39
39
40
40
## Installation
41
-
We suggest installing tomotools into its own conda / mamba environment.
41
+
We suggest installing tomotools into its own conda / mamba environment. If you can only access your userspace, consider using [micromamba](https://mamba.readthedocs.io/en/latest/installation.html).
42
42
43
43
### Install via:
44
44
```
@@ -57,5 +57,10 @@ If you're using an sbgrid environment, make sure to set the following in your ``
57
57
```
58
58
PYTHON_X=3.8.8 (anything > 3.8 works)
59
59
```
60
+
Additionally, try ```pip --version``` to make sure it's correctly working. This is required for ```tomotools update```. Else, you can add the following line to your ```.bashrc```:
61
+
62
+
```
63
+
alias pip='python -m pip'
64
+
```
60
65
61
66
### Feedback, Bug Reports and Contributions are always welcome!
0 commit comments