ModelSEED commands aren't working

[mdejongh]

after an ms-update, commands like fba-checkgrowth print no results. There are calls to interface::LOADENVIRONMENT with no arguments that seem to be implicated.

[mdejongh]

Two fixes allow me to run fba-checkgrowth again:

1. the ARGS subroutine in utilities.pm expects a HASH but doesn't always get one, so I create an empty hash if necessary:

--- a/lib/ModelSEED/utilities.pm
+++ b/lib/ModelSEED/utilities.pm
@@ -16,6 +16,9 @@ Description:
=cut
sub ARGS {
my ($args,$mandatoryArguments,$optionalArguments) = @_;

•   if (! defined $args) {
  

•       $args = {};
  

•   }
  if (ref($args) ne "HASH") {
          ModelSEED::utilities::ERROR("Arguments not hash");  
  }
  

2. In Argonne.txt the output directory was changed to fbajobs; not sure why, but I changed it back to MFAToolkitOutputFiles and it works now

[cshenry]

Hi Matt,

I did an update to fix this. Is it working for you now?

Chris

On Jul 16, 2012, at 3:54 PM, mdejongh wrote:

after an ms-update, commands like fba-checkgrowth print no results. There are calls to interface::LOADENVIRONMENT with no arguments that seem to be implicated.

---

Reply to this email directly or view it on GitHub:
#166

[mdejongh]

Yes, looks good.

On Fri, Jul 20, 2012 at 2:29 PM, cshenry
[email protected]
wrote:

Hi Matt,

I did an update to fix this. Is it working for you now?

Chris

On Jul 16, 2012, at 3:54 PM, mdejongh wrote:

after an ms-update, commands like fba-checkgrowth print no results. There are calls to interface::LOADENVIRONMENT with no arguments that seem to be implicated.

---

Reply to this email directly or view it on GitHub:
#166

---

Reply to this email directly or view it on GitHub:
#166 (comment)

Matt DeJongh, Ph.D.
Computer Science Department
Hope College, Holland, MI 49423
(616) 395-7429