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{: RETURN "<?xml version="+ chr(34) + "1.0" + chr(34) + " encoding=" + chr(34) + "utf-8"+ chr(34) + "?>";}
{: /************************************ CQM , début :le 22/08/2023, MISPL d'EN-TETE LDT ONCOGENETIQUE (associé au "BB_LDT_SSA_ONCOGENETIQ" en section d'action ****************************/
STRING sXML;
STRING sTraca1, sTraca2,sTraca3,sTraca4,sLOT,sPLAN;
STRING sI, sL, sO, sRC, Sep, sHBT, sCBT, sTABH, sTABV, sI2,e1,e2,e3,e4,e5,e6,e7,e8,e9,e10,e20,e30,e40,e50,p5,p10,p20,p30,p40,p50,sDg,chk ; /* Variables ASCII */
STRING sCount, sWlt, sWltBIS, sUser, sLN, sFN, sRecFinal1, sRecFinal2, sTab, sTab2; /* Variables communes */
STRING sHIFIMSI, sH20MSI, sCustomMSI, sTxt1MSI, sPanelMSI1, sPanelMSI2, sPanelMSI3, sPanelMSI4, sVerifMSI, sVerifMSI2; /* Variables recette MSI */
FRACTIONAL fCoefMSI, fVerifMSI, fHIFIMSI, fH20MSI, fCustomMSI;
STRING sHIFIplus, sH20plus, sCustomplus, sPanelPlus1, sPanelPlus2, sPanelPlus3, sPanelPlus4, sVerifPlus,sVerifPlus2; /* Variables recette Onco plus */
FRACTIONAL fCoefplus, fHIFIplus, fH20plus, fCustomplus;
INTEGER iCount;
/*------------------------------------------------------------------------------- Identification et tracabilité de la liste de travail ---------------------------------------------------------------------*/
sUser := .CreationUser.LastName;
sUser := " Générée par : " + ToUpper(Substr(.CreationUser.FirstName,1,1))+"."+ ToUpper(Substr(sUser,1,1)) + ToLower(Substr(sUser,2,15));
sWlt := Substr(.Name,4,12);
sWltBIS := sWlt;
sWLTBIS := "Liste de travail :" + sWLT + "." + sUser + ". " + DateTimeToString(.CreationTime,"%d/%m/%Y");
/*-------------------------------------------------------------- Table ASCII - Table Fill - Variables de correction Ne pas toucher -----------------------------------------------------------------*/
e1 := Fill(" ",1);
e2 := Fill(" ",2);
e3 := Fill(" ",3);
e4 := e2 + e2;
e5 := e2 + e3;
e6 := e3 + e3;
e7 := e3 + e4;
e8 := e4 + e4;
e9 := e4 + e5;
e10:= e5 + e5;
e20:= e10 + e10;
e30:= e10 + e20;
e40:= e10 + e30;
e50:= e10 + e40;
p5:= Fill(".",5);
p10:= Fill(".",10);
p20:= p10 + p10;
p30:= p20 + p10;
p40:= p20 + p20;
p50:= p20 + p30;
sI := chr(124);
sI2 := chr(124);
sL := chr(166);
sO := chr(149);
sRC := chr(13);
Sep := chr(45);
sHBT := chr(61);
sCBT := chr(166)+ chr(166);
sTABH:= chr(9);
sTABV:= chr(11);
sDg := chr(176)+"c";
chk := chr(91) + " " + chr(93) + " ";
/*---------------------------------------------------------------------------------- Détermination des coefficients multiplicateurs-------------------------------------------------------------------------*/
iCount := .EntryCount;
/* PCR BRCA */
/* PCR MSI ET plus + */
fCoefMSI := iCount + 1;
fCoefplus := iCount + 1;
/*----------------------------------CAS1 : Montage et développement de la recette PCR MSI ------------------------*/
IF LOOKUP(sWlt,"PCR-MSI","") > 0 THEN
/*--------------------------- REACTIFS DE PCR ---------------------------------*/
fHIFIMSI := 4.0 * fCoefMSI;
sHIFIMSI := FractionalToString(fHIFIMSI,"%3.1f") + " µl" ;
fH20MSI := 4.0 * fCoefMSI;
sH20MSI := FractionalToString(fH20MSI,"%3.1f") + " µl" ;
fCustomMSI := 10.0 * fCoefMSI ;
sCustomMSI := FractionalToString(fCustomMSI, "%3.1f") + " µl";
sVerifMSI := e4 + FractionalToString(((fHIFIMSI + fH20MSI + fCustomMSI)/fCoefMSI), "%4.1f") + e4 ;
sVerifMSI2 := FractionalToString((fHIFIMSI + fH20MSI + fCustomMSI),"%4.1f") + " µl";
/*--------------------------- Textes PCR MSI ---------------------------------*/
sPanelMSI1 := "Utiliser le panel MSI " ;
sPanelMSI2 := "Ion Ampliseq " + chr(153)+ " Custom MSI à aliquoter en 100 µL";
sPanelMSI3 := " 5X Ion ampliseq HIFI MIX";
sPanelMSI4 := " Ion Ampliseq Custom MSI";
/*--------------------------- Montage des tableaux de recette PCR et Programme Thermo ---------------------------------*/
sTab := "";
sTab := sTab + cPad(sPanelMSI1,75," ") + sRC;
sTab := sTab + cPad(sPanelMSI2,58," ") + sRC;
sTab := sTab + cPad(Fill("_",44),46," ") + sRC;
sTab := sTab + cPad("Préparer le MIX suivant: ",75," ") + sRC + sRC;
sTab := sTab + sO + " REACTIFS (µl) " + e10+e8 + sI + " Vol/puits " + sI + " Vol total " + sRC;
sTab := sTab + LPad(Fill(Sep,75),75,"") + sRC;
sTab := sTab + sO + sPanelMSI3 + e2 + sI + e4 + "4.00" + e4 + sI + e2 + sHIFIMSI + sRC;
sTab := sTab + LPad(Fill(Sep,75),75,"") + sRC;
sTab := sTab + sO +" H2O Nucléase Free" + e10 +e1 + sI + e4 + "4.00" + e4 + sI + e2 + sH20MSI + sRC;
sTab := sTab + LPad(Fill(Sep,75),75,"") + sRC;
sTab := sTab + sO + sPanelMSI4 + e1 + sI + e4 + "10.0" + e4 + sI + e2+ sCustomMSI + sRC;
sTab := sTab + LPad(Fill(Sep,75),75,"") + sRC;
sTab := sTab + sO + "Total " + e30 + e5 + sI + sVerifMSI + sI + e2 + sVerifMSI2 + sRC;
sTab := sTab + LPad(Fill(Sep,75),75,"") + sRC;
sTab := sTab + sO + " Déposer 18 µL du mix par puits" + sRC;
sTraca1 := cPad("PREPARATION PCR MSI PIECE 616",70," ") ;
sTraca2 := cPad("PCR AMPLIFICATION PIECE 618",70," ") ;
sTab2 := sRC;
sTab2 := sTab2 + e1 + sO + " Ajouter 2 µL de dilution d'ADN patient à 5ng/µl/puits" + sRC;
sTab2 := sTab2 + e1 + sO + " Ajouter 2 µL de dilution C+ et STD à 2ng/µl/puits" + sRC;
sTab2 := sTab2 + e1 + sO + " Lancer la PCR selon le programme ci-dessous :" + sRC;
sTab := sTab + cPad(Fill("_",44),46," ") + sRC;
sTab2 := sTab2 + e10 + sI + LPad(Fill(Sep,47),48," ") + sI + sRC;
sTab2 := sTab2 + e10 + sI + " Programme PCR : ADN Oncomine " + sI + sRC;
sTab2 := sTab2 + e10 + sI + LPad(Fill(Sep,47),48," ") + sI + sRC;
sTab2 := sTab2 + e10 + sI + e4 +" Température " + e4 + sI + e8 +" Durée "+ e6 + sI + sRC;
sTab2 := sTab2 + e10 + sI + LPad(Fill(Sep,47),48," ") + sI + sRC;
sTab2 := sTab2 + e10 + sI + sO + e6 + " 99 " + sDg + e7 + sI + e8 +"02 min "+ e6 + sI + sRC;
sTab2 := sTab2 + e10 + sI + LPad(Fill(Sep,47),48," ") + sI + Fill("_",10) + sRC;
sTab2 := sTab2 + e10 + sI + sO + e6 + " 99 " + sDg + e7 + sI + e8 +"15 sec "+ e6 + sRC;
sTab2 := sTab2 + e10 + sI + LPad(Fill(Sep,47),48," ") + chr(125) + " 22 Cycles" + sRC;
sTab2 := sTab2 + e10 + sI + sO + e6 + " 60 " + sDg + e7 + sI + e8 +"04 min "+ e10+e2 + "PCR" + sRC;
sTab2 := sTab2 + e10 + sI + LPad(Fill(Sep,47),48," ") + e1 + Fill("_",10) + sRC;
sTab2 := sTab2 + e10 + sI + sO + e6 + " 10 " + sDg + e7 + sI + e8 + "Infini " + e9 + sI + sRC;
sTab2 := sTab2 + e10 + e1 + LPad(Fill(Sep,47),48," ") + sRC;
sLOT := sRC ;
sLOT := sLOT + " " + sO + " N° de lot panel MSI : " + p50 +sRC + sRC;
sLOT := sLOT + " " + sO + " N° de lot HIFI MIX : " + p50 ;
sPLAN := sRC;
sPLAN := sPLAN + sO + " Thermocycleur utilisé : " + e7 +chk + "PLUTON" + sRC;
sPLAN := sPLAN + sRC;
sPLAN := sPLAN + e50 + chk + "ATHENA" + sRC;
sPLAN := sPLAN + sRC;
sPLAN := sPLAN + e50 + chk + "PEGASE 2" + sRC;
sPLAN := sPLAN + sRC;
sPLAN := sPLAN + e50 + chk + "AUTRE : " + sRC;
sPLAN := sPLAN + " " + cPad(Fill("_",52),52," ") + sRC;
sPLAN := sPLAN + sRC ;
sPLAN := sPLAN + sO + " Séquençage lancé semaine :" + p50 ;
sRecFinal1 := sTab;
sRecFinal2 := sTab2;
sTraca3 := "Tracabilité des Réactifs ";
sTraca4 := "Tracabilité technique - Remarques ";
ENDIF;
/*----------------------------------CAS2 : Montage et développement de la recette PCR ONCOMINE plus+ ------------------------*/
IF LOOKUP(sWlt,"PCR-ONCOMINE","") > 0 THEN
/*--------------------------- REACTIFS DE PCR ---------------------------------*/
/*--------------------------- REACTIFS DE PCR ---------------------------------*/
fHIFIplus := 4.0 * fCoefplus;
sHIFIplus := FractionalToString(fHIFIplus,"%3.1f") + " µl" ;
fH20plus := 10.0 * fCoefplus;
sH20plus := FractionalToString(fH20plus,"%3.1f") + " µl" ;
fCustomplus := 4.0 * fCoefplus ;
sCustomplus := FractionalToString(fCustomplus, "%3.1f") + " µl";
sVerifPlus := e4 + FractionalToString(((fHIFIplus + fH20plus + fCustomplus)/fCoefplus), "%4.1f") + e4 ;
sVerifPlus2 := FractionalToString((fHIFIplus + fH20plus + fCustomplus),"%4.1f") + " µl";
/*--------------------------- Textes PCR MSI ---------------------------------*/
sPanelPlus1 := "Utiliser le panel Onco + " ;
sPanelPlus2 := "Ion Ampliseq " + chr(153)+ " Onco + à aliquoter en 100 µL";
sPanelPlus3 := " 5X Ion ampliseq HIFI MIX";
sPanelPlus4 := " Ion Ampliseq ONCO +";
/*--------------------------- Montage des tableaux de recette PCR et Programme Thermo ---------------------------------*/
sTab := "";
sTab := sTab + cPad(sPanelPlus1,75," ") + sRC;
sTab := sTab + cPad(sPanelPlus2,58," ") + sRC;
sTab := sTab + cPad(Fill("_",44),46," ") + sRC;
sTab := sTab + cPad("Préparer le MIX suivant: ",75," ") + sRC + sRC;
sTab := sTab + sO + " REACTIFS (µl) " + e10+e8 + sI + " Vol/puits " + sI + " Vol total " + sRC;
sTab := sTab + LPad(Fill(Sep,75),75,"") + sRC;
sTab := sTab + sO + sPanelPlus3 + e2 + sI + e4 + "4.00" + e4 + sI + e2 + sHIFIplus + sRC;
sTab := sTab + LPad(Fill(Sep,75),75,"") + sRC;
sTab := sTab + sO +" H2O Nucléase Free" + e10 +e1 + sI + e4 + "10.0" + e4 + sI + e2 + sH20plus + sRC;
sTab := sTab + LPad(Fill(Sep,75),75,"") + sRC;
sTab := sTab + sO + sPanelPlus4 + e7 + sI + e4 + "4.00" + e4 + sI + e2+ sCustomplus + sRC;
sTab := sTab + LPad(Fill(Sep,75),75,"") + sRC;
sTab := sTab + sO + "Total " + e30 + e5 + sI + sVerifPlus + sI + e2 + sVerifPlus2 + sRC;
sTab := sTab + LPad(Fill(Sep,75),75,"") + sRC;
sTab := sTab + sO + " Déposer 18 µL du mix par puits" + sRC;
sTraca1 := cPad("PREPARATION PCR MSI PIECE 616",70," ") ;
sTraca2 := cPad("PCR AMPLIFICATION PIECE 618",70," ") ;
sTab2 := sRC;
sTab2 := sTab2 + e1 + sO + " Ajouter 2 µL de dilution d'ADN patient à 5ng/µl/puits" + sRC;
sTab2 := sTab2 + e1 + sO + " Ajouter 2 µL de dilution C+ HD200 à 2ng/µl /puits" + sRC;
sTab2 := sTab2 + e1 + sO + " Lancer la PCR selon le programme ci-dessous :" + sRC;
sTab := sTab + cPad(Fill("_",44),46," ") + sRC;
sTab2 := sTab2 + e1 + sO + " 5) Lancer la PCR selon le programme ci-dessous :" + sRC;
sTab2 := sTab2 + e10 + sI + LPad(Fill(Sep,47),48," ") + sI + sRC;
sTab2 := sTab2 + e10 + sI + " Programme PCR : ADN Oncomine " + sI + sRC;
sTab2 := sTab2 + e10 + sI + LPad(Fill(Sep,47),48," ") + sI + sRC;
sTab2 := sTab2 + e10 + sI + e4 +" Température " + e4 + sI + e8 +" Durée "+ e6 + sI + sRC;
sTab2 := sTab2 + e10 + sI + LPad(Fill(Sep,47),48," ") + sI + sRC;
sTab2 := sTab2 + e10 + sI + sO + e6 + " 99 " + sDg + e7 + sI + e8 +"02 min "+ e6 + sI + sRC;
sTab2 := sTab2 + e10 + sI + LPad(Fill(Sep,47),48," ") + sI + Fill("_",10) + sRC;
sTab2 := sTab2 + e10 + sI + sO + e6 + " 99 " + sDg + e7 + sI + e8 +"15 sec "+ e6 + sRC;
sTab2 := sTab2 + e10 + sI + LPad(Fill(Sep,47),48," ") + chr(125) + " 22 Cycles" + sRC;
sTab2 := sTab2 + e10 + sI + sO + e6 + " 60 " + sDg + e7 + sI + e8 +"04 min "+ e10+e2 + "PCR" + sRC;
sTab2 := sTab2 + e10 + sI + LPad(Fill(Sep,47),48," ") + e1 + Fill("_",10) + sRC;
sTab2 := sTab2 + e10 + sI + sO + e6 + " 10 " + sDg + e7 + sI + e8 + "Infini " + e9 + sI + sRC;
sTab2 := sTab2 + e10 + e1 + LPad(Fill(Sep,47),48," ") + sRC;
sLOT := sRC ;
sLOT := sLOT + " " + sO + " N° de lot panel ONCO + : " + p50 +sRC + sRC;
sLOT := sLOT + " " + sO + " N° de lot HIFI MIX : " + p50 ;
sPLAN := sRC;
sPLAN := sPLAN + sO + " Thermocycleur utilisé : " + e7 +chk + "PLUTON" + sRC;
sPLAN := sPLAN + sRC;
sPLAN := sPLAN + e50 + chk + "ATHENA" + sRC;
sPLAN := sPLAN + sRC;
sPLAN := sPLAN + e50 + chk + "PEGASE 2" + sRC;
sPLAN := sPLAN + sRC;
sPLAN := sPLAN + e50 + chk + "AUTRE : " + sRC;
sPLAN := sPLAN + " " + cPad(Fill("_",52),52," ") + sRC;
sPLAN := sPLAN + sRC ;
sPLAN := sPLAN + sO + " Séquençage lancé semaine :" + p50 ;
sRecFinal1 := sTab;
sRecFinal2 := sTab2;
sTraca3 := "Tracabilité des Réactifs ";
sTraca4 := "Tracabilité technique - Remarques ";
ENDIF;
/*-------------------------------- CAS3 : Montage et développement de la recette PCR BRCA ---------------------*/
IF LOOKUP(sWlt,"PCR-BRCA","") > 0 THEN
sTraca1 := "En développement";
sTraca2 := "En développement";
sRecFinal1 := "En Développement" ;
sRecFinal2 := "En Développement" ;
sTraca3 := "En développement ";
sTraca4 := "En développement";
sLOT := "En développement";
sPLAN := " En développement";
ENDIF;
/****************************************************************************************** Ne pas TOUCHER, partie invariable **************************************************************************/
sXML := "";
sXML := sXML + "<CUSTOM1>" + IfKnownString(sWLTBIS) + "</CUSTOM1>";
sXML := sXML + "<CUSTOMTITLE1>" + sTraca3 + "</CUSTOMTITLE1>";
sXML := sXML + "<CUSTOMTITLE2>" + sTraca4 + "</CUSTOMTITLE2>";
sXML := sXML + "<CUSTOMMIX1>" + IfKnownString(sLOT) + "</CUSTOMMIX1>";
sXML := sXML + "<CUSTOMMIX2>" + IfKnownString(sPLAN) + "</CUSTOMMIX2>";
sXML := sXML + "<CUSTOM14>" + sTraca1 + "</CUSTOM14>";
sXML := sXML + "<CUSTOM15>" + sTraca2 + "</CUSTOM15>";
sXML := sXML + "<CUSTOM16>" + sRecFinal1 + "</CUSTOM16>";
sXML := sXML + "<CUSTOM17>" + sRecFinal2 + "</CUSTOM17>";
sXML := sXML + "<CUSTOMN1>" + "INFOS DOSSIER" + "</CUSTOMN1>";
sXML := sXML + "<CUSTOMN3>" + "COPEAUX" + "</CUSTOMN3>";
sXML := sXML + "<CUSTOMDOS1>" + "INFOS PATIENT" + "</CUSTOMDOS1>";
sXML := sXML + "<CUSTOMCB>" + "CODE BARRE" + "</CUSTOMCB>";
sXML := sXML + "<CUSTOM6>" + "BIOTHEQUES" + "</CUSTOM6>";
sXML := sXML + "<CUSTOMRES>" + "REMARQUES" + "</CUSTOMRES>";
RETURN sXML;
}