- write CLI
- analysis of fitting sensitivity
- l1 optimization algorithm
- get rid of the intervaltree
- passing of the parameter:
- the parameters should be stored as dictionaries.
- the docs should have references to check up on them.
- write a test comparing the output of different deconvolution methods.
- get rid of these set themes:
- the user should decide about this
- create a separate module for pictures management
- the ppm intervals might overlap!!!
DONE:
- quality of fit
- errors for each deconvolution problem
- writing down to csv
- rewrite the paper
- plots with multiple experiments in the paper
- simplify the picts on deconvolution
- multiprocessing batch files
- run on all orbitrap data
- run on all previous data
- compare with last results
- adjust masstodon for non-orbitrap data
- providing the interval length
- assure that different intervals do not intersect
- if they do, make them shorter