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Compiling PhysiCell in a MacBook Pro with M2 #169
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It appears you are trying to use the clang compiler which unfortunately does not support OpenMP (which PhysiCell uses). Please see the latest setup guide for MacOS for installing/using the g++ compiler via brew: https://github.com/physicell-training/ws2023/blob/main/setup/PhysiCell_ws2023_macOS_setup.pdf |
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I have been unable to compile PhysiCell on my MacBookPro
After make ANY-PROJECT > make, I obtain this error:
ld: symbol(s) not found for architecture arm64
clang-16: error: linker command failed with exit code 1 (use -v to see invocation)
make: *** [all] Error 1
I have installed all the required programs. I've tried with several flags, and PhysiCell can be compiled.:
clang-16 -march=native -O3 -fomit-frame-pointer -fopenmp -m64 -std=c++11 -v -o worm BioFVM_vector.o BioFVM_mesh.o BioFVM_microenvironment.o BioFVM_solvers.o BioFVM_matlab.o BioFVM_utilities.o BioFVM_basic_agent.o BioFVM_MultiCellDS.o BioFVM_agent_container.o pugixml.o PhysiCell_phenotype.o PhysiCell_cell_container.o PhysiCell_standard_models.o PhysiCell_cell.o PhysiCell_custom.o PhysiCell_utilities.o PhysiCell_constants.o PhysiCell_basic_signaling.o PhysiCell_signal_behavior.o PhysiCell_rules.o PhysiCell_SVG.o PhysiCell_pathology.o PhysiCell_MultiCellDS.o PhysiCell_various_outputs.o PhysiCell_pugixml.o PhysiCell_settings.o PhysiCell_geometry.o custom.o main.cpp
Do you know how I can fix this issue?
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