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9. Sensitivity analysis.R
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9. Sensitivity analysis.R
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#Sensitivity analysis
#load package
library(sensemakr)
#load datat
Optho <- read.csv("Fixed optho num proxy.csv")
Optho3 <- Optho[2:26]
# runs regression model
#-----------------------------------------------------------------
#CVM
Optho.model.CVM <- lm(Cortical.visual.impairement ~ PBD.group,
data = Optho3)
summary(Optho.model.CVM)
# runs sensemakr for sensitivity analysis
optho.sensitivity.cmv <- sensemakr(model = Optho.model.CVM,
treatment = "PBD.group")
optho.sensitivity.cmv
summary(optho.sensitivity.cmv)
#-----------------------------------------------------------------
#Cataract
Optho.model.Cataract <- lm(Cataract ~ PBD.group,
data = Optho3)
summary(Optho.model.Cataract)
# runs sensemakr for sensitivity analysis
optho.sensitivity.Cataract <- sensemakr(model = Optho.model.Cataract,
treatment = "PBD.group")
summary(optho.sensitivity.Cataract)
#-----------------------------------------------------------------
#Nyctalopia
Optho.model.Nyctalopia <- lm(Nyctalopia ~ PBD.group,
data = Optho3)
summary(Optho.model.Nyctalopia)
# runs sensemakr for sensitivity analysis
optho.sensitivity.Nyctalopia <- sensemakr(model = Optho.model.Nyctalopia,
treatment = "PBD.group")
optho.sensitivity.Nyctalopia
summary(optho.sensitivity.Nyctalopia)
#-----------------------------------------------------------------
#Maculopathy
Optho.model.Maculopathy <- lm(Maculopathy ~ PBD.group,
data = Optho3)
summary(Optho.model.Maculopathy)
# runs sensemakr for sensitivity analysis
optho.sensitivity.Maculopathy <- sensemakr(model = Optho.model.Maculopathy,
treatment = "PBD.group")
optho.sensitivity.Maculopathy
summary(optho.sensitivity.Maculopathy)
#-----------------------------------------------------------------
#Retinitis.pigmentosa
Optho.model.Retinitis.pigmentosa <- lm(Retinitis.pigmentosa ~ PBD.group,
data = Optho3)
summary(Optho.model.Retinitis.pigmentosa)
# runs sensemakr for sensitivity analysis
optho.sensitivity.Retinitis.pigmentosa <- sensemakr(model = Optho.model.Retinitis.pigmentosa,
treatment = "PBD.group")
optho.sensitivity.Retinitis.pigmentosa
summary(optho.sensitivity.Retinitis.pigmentosa)
#-----------------------------------------------------------------
#Bilateral.hyperopia
Optho.model.Bilateral.hyperopia <- lm(Bilateral.hyperopia ~ PBD.group,
data = Optho3)
summary(Optho.model.Bilateral.hyperopia)
# runs sensemakr for sensitivity analysis
optho.sensitivity.Bilateral.hyperopia <- sensemakr(model = Optho.model.Bilateral.hyperopia,
treatment = "PBD.group")
optho.sensitivity.Bilateral.hyperopia
summary(optho.sensitivity.Bilateral.hyperopia)
#-----------------------------------------------------------------
#Blindness
Optho.model.Blindness <- lm(Blindness ~ PBD.group,
data = Optho3)
summary(Optho.model.Blindness)
# runs sensemakr for sensitivity analysis
optho.sensitivity.Blindness <- sensemakr(model = Optho.model.Blindness,
treatment = "PBD.group")
optho.sensitivity.Blindness
summary(optho.sensitivity.Blindness)
#-----------------------------------------------------------------
#Optic.Nerve.Atrophy
Optho.model.Optic.Nerve.Atrophy <- lm(Optic.Nerve.Atrophy ~ PBD.group,
data = Optho3)
summary(Optho.model.Optic.Nerve.Atrophy)
# runs sensemakr for sensitivity analysis
optho.sensitivity.Optic.Nerve.Atrophy <- sensemakr(model = Optho.model.Optic.Nerve.Atrophy,
treatment = "PBD.group")
optho.sensitivity.Optic.Nerve.Atrophy
summary(optho.sensitivity.Optic.Nerve.Atrophy)
#-----------------------------------------------------------------
#Nystagmus..TRUE
Optho.model.Nystagmus..TRUE <- lm(Nystagmus..TRUE ~ PBD.group,
data = Optho3)
summary(Optho.model.Nystagmus..TRUE)
# runs sensemakr for sensitivity analysis
optho.sensitivity.Nystagmus..TRUE <- sensemakr(model = Optho.model.Nystagmus..TRUE,
treatment = "PBD.group")
optho.sensitivity.Nystagmus..TRUE
summary(optho.sensitivity.Nystagmus..TRUE)
#-----------------------------------------------------------------
#Macula..Normal.Appearing
Optho.model.Macula..Normal.Appearing <- lm(Macula..Normal.Appearing ~ PBD.group,
data = Optho3)
summary(Optho.model.Macula..Normal.Appearing)
# runs sensemakr for sensitivity analysis
optho.sensitivity.Macula..Normal.Appearing <- sensemakr(model = Optho.model.Macula..Normal.Appearing,
treatment = "PBD.group")
optho.sensitivity.Macula..Normal.Appearing
summary(optho.sensitivity.Macula..Normal.Appearing)
#-----------------------------------------------------------------
#Macular.Pigmentary.changes
Optho.model.Macular.Pigmentary.changes <- lm(Macular.Pigmentary.changes ~ PBD.group,
data = Optho3)
summary(Optho.model.Macular.Pigmentary.changes)
# runs sensemakr for sensitivity analysis
optho.sensitivity.Macular.Pigmentary.changes <- sensemakr(model = Optho.model.Macular.Pigmentary.changes,
treatment = "PBD.group")
optho.sensitivity.Macular.Pigmentary.changes
summary(optho.sensitivity.Macular.Pigmentary.changes)
#-----------------------------------------------------------------
#Macular.edema
Optho.model.Macular.edema <- lm(Macular.edema ~ PBD.group,
data = Optho3)
summary(Optho.model.Macular.edema)
# runs sensemakr for sensitivity analysis
optho.sensitivity.Macular.edema <- sensemakr(model = Optho.model.Macular.edema,
treatment = "PBD.group")
optho.sensitivity.Macular.edema
summary(optho.sensitivity.Macular.edema)
#-----------------------------------------------------------------
#Foveal.hypoplasia
Optho.model.Foveal.hypoplasia <- lm(Foveal.hypoplasia ~ PBD.group,
data = Optho3)
summary(Optho.model.Foveal.hypoplasia)
# runs sensemakr for sensitivity analysis
optho.sensitivity.Foveal.hypoplasia <- sensemakr(model = Optho.model.Foveal.hypoplasia,
treatment = "PBD.group")
optho.sensitivity.Foveal.hypoplasia
summary(optho.sensitivity.Foveal.hypoplasia)
#-----------------------------------------------------------------
#Macular thinning
Optho.model.Macular.thinning <- lm(Macular.thinning ~ PBD.group,
data = Optho3)
summary(Optho.model.Macular.thinning)
# runs sensemakr for sensitivity analysis
optho.sensitivity.Macular.thinning <- sensemakr(model = Optho.model.Macular.thinning,
treatment = "PBD.group")
optho.sensitivity.Macular.thinning
summary(optho.sensitivity.Macular.thinning)
#-----------------------------------------------------------------
#Optic.nerve.hypoplasia
Optho.model.Optic.nerve.hypoplasia <- lm(Optic.nerve.hypoplasia ~ PBD.group,
data = Optho3)
summary(Optho.model.Optic.nerve.hypoplasia)
# runs sensemakr for sensitivity analysis
optho.sensitivity.Optic.nerve.hypoplasia <- sensemakr(model = Optho.model.Optic.nerve.hypoplasia,
treatment = "PBD.group")
optho.sensitivity.Optic.nerve.hypoplasia
summary(optho.sensitivity.Optic.nerve.hypoplasia)
#-----------------------------------------------------------------
#Optic.nerve.drusen
Optho.model.Optic.nerve.drusen <- lm(Optic.nerve.drusen ~ PBD.group,
data = Optho3)
summary(Optho.model.Optic.nerve.drusen)
# runs sensemakr for sensitivity analysis
optho.sensitivity.Optic.nerve.drusen <- sensemakr(model = Optho.model.Optic.nerve.drusen,
treatment = "PBD.group")
optho.sensitivity.Optic.nerve.drusen
summary(optho.sensitivity.Optic.nerve.drusen)
#-----------------------------------------------------------------
#Optic.nerve..Normal.appearing
Optho.model.Optic.nerve..Normal.appearing <- lm(Optic.nerve..Normal.appearing ~ PBD.group,
data = Optho3)
summary(Optho.model.Optic.nerve..Normal.appearing)
# runs sensemakr for sensitivity analysis
optho.sensitivity.Optic.nerve..Normal.appearing <- sensemakr(model = Optho.model.Optic.nerve..Normal.appearing,
treatment = "PBD.group")
optho.sensitivity.Optic.nerve..Normal.appearing
summary(optho.sensitivity.Optic.nerve..Normal.appearing)
#-----------------------------------------------------------------
#Optic.nerve.atrophy
Optho.model.Optic.nerve.atrophy <- lm(Optic.nerve.atrophy ~ PBD.group,
data = Optho3)
summary(Optho.model.Optic.nerve.atrophy)
#-----------------------------------------------------------------
#Peripheral.retina..Leopard.spots
Optho.model.Peripheral.retina..Leopard.spots <- lm(Peripheral.retina..Leopard.spots ~ PBD.group,
data = Optho3)
summary(Optho.model.Peripheral.retina..Leopard.spots)
#-----------------------------------------------------------------
#Vessels..Attenuated.vessels
Optho.model.Vessels..Attenuated.vessels <- lm(Vessels..Attenuated.vessels ~ PBD.group,
data = Optho3)
summary(Optho.model.Vessels..Attenuated.vessels)
#-----------------------------------------------------------------
#Pupils.1..Equal
Optho.model.Pupils.1..Equal <- lm(Pupils.1..Equal ~ PBD.group,
data = Optho3)
summary(Optho.model.Pupils.1..Equal)
#-----------------------------------------------------------------
#Pupils.2..Reactive
Optho.model.Pupils.2..Reactive <- lm(Pupils.2..Reactive ~ PBD.group,
data = Optho3)
summary(Optho.model.Pupils.2..Reactive)
#-----------------------------------------------------------------
#Refraction_OD_R
Optho.model.Refraction_OD_R <- lm(Refraction_OD_R ~ PBD.group,
data = Optho3)
summary(Optho.model.Refraction_OD_R)
#-----------------------------------------------------------------
#Refraction_OS_L
Optho.model.Refraction_OS_L <- lm(Refraction_OS_L ~ PBD.group,
data = Optho3)
summary(Optho.model.Refraction_OS_L)
#-----------------------------------------------------------------