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spectral library formats #376
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Hi, Thanks for reporting the bug. I moved this to an issue so we can track it. In the log you attached the library was loaded correctly (see log) and the crash happened during the search.
The crash in the log might have been due to hitting memory limitations. Is this a separate issue or the one you are referring to with the library. |
If you have a spectronaut library which is failing to load it would be great if you could send a minimal example. We will add it to our test suite. |
The crash of the search was a due to a memory issue which is now fixed. While the Spectronaut library loads successfully, I notice that all entries containing phosphorylation modifications (defined as [Phospho]) are being removed during import because it is seen as an unkown modification. Is there a way to define "Phospho" as a custom modification in the YAML configuration to prevent this removal and ensure these modifications are properly recognized? from log: Current configuration yaml (as a txt file) a section of my spectral libarary spectronaut.tsv |
Changed modification definitions from "[Phospho]" to "[UniMod:21]" and it is now successfully recognized. But Now I am still running into the 'No objects to Concatenate' error |
Discussed in #375
Originally posted by rednaSander November 15, 2024
Hi,
Issue:
The software crashes when attempting to load a .spectronaut.tsv spectral library file.
CopyEnvironment:
Questions:
Additional Information:
log.txt
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