From 781ad18eafd1c3c80477c9efb6eb2247383dfbf4 Mon Sep 17 00:00:00 2001 From: Gibran Hemani Date: Thu, 16 Jan 2025 21:51:17 +0000 Subject: [PATCH] in case of re-runs --- resources/genotypes/variant_ids_bim.r | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/resources/genotypes/variant_ids_bim.r b/resources/genotypes/variant_ids_bim.r index fba06be..cc1bcda 100644 --- a/resources/genotypes/variant_ids_bim.r +++ b/resources/genotypes/variant_ids_bim.r @@ -24,7 +24,7 @@ compress_alleles <- function(a) { # ) # update orig bim -file.copy(paste0(bfile, ".bim"), paste0(bfile, ".bim.orig")) +file.copy(paste0(bfile, ".bim"), paste0(bfile, ".bim.orig"), overwrite = TRUE) bim <- data.table::fread(paste0(bfile, ".bim.orig"), nThread = nthreads) bim$switch <- bim$V5 > bim$V6 temp <- bim$V5[bim$switch]