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pom.xml
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pom.xml
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<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>edu.mit.ll</groupId>
<artifactId>graphulo</artifactId>
<version>3.1.2</version>
<packaging>jar</packaging>
<name>Graphulo</name>
<description>
Graphulo: Accumulo library of matrix math primitives and graph algorithms.
</description>
<url>http://graphulo.mit.edu/</url>
<organization>
<name>MIT Lincoln Laboratory</name>
<url>https://www.ll.mit.edu/</url>
</organization>
<inceptionYear>2014</inceptionYear>
<scm>
<url>https://github.com/Accla/graphulo</url>
<connection>scm:git:[email protected]:Accla/graphulo.git</connection>
<developerConnection>scm:git:[email protected]:Accla/graphulo.git</developerConnection>
<tag>HEAD</tag>
</scm>
<developers>
<developer>
<id>shutchis</id>
<name>Shana Hutchison</name>
<email>[email protected]</email>
<url>http://db.cs.washington.edu/people.html</url>
<organization>University of Washington</organization>
<organizationUrl>https://www.cs.washington.edu/</organizationUrl>
</developer>
</developers>
<properties>
<DBinit.path.libextFolder>libext/</DBinit.path.libextFolder>
<DBinit.path.mpath>${basedir}/src/assembly/build_DBinit/build_DBinit.m</DBinit.path.mpath>
<DBinit.path.outputFile>DBinit.m</DBinit.path.outputFile>
<DBinit.path.libextZip>graphulo-${project.version}-libext</DBinit.path.libextZip>
<test>TEST_CONFIG</test>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<accumulo.version>1.8.1</accumulo.version>
<accumulo.version.majorminor>1.8</accumulo.version.majorminor>
<hadoop.version>2.7.2</hadoop.version>
<htrace.version>3.1.0-incubating</htrace.version>
<json.version>chargebee-1.0</json.version>
<collections4.version>4.1</collections4.version>
</properties>
<build>
<resources>
<!--<resource>-->
<!--<directory>${basedir}/..</directory>-->
<!--<filtering>false</filtering>-->
<!--<includes>-->
<!--<include>README.md</include>-->
<!--</includes>-->
<!--</resource>-->
<resource>
<directory>src/assembly</directory>
<filtering>true</filtering>
<includes>
<include>**/build_DBinit.bash</include>
</includes>
</resource>
<resource>
<directory>src/assembly</directory>
<filtering>false</filtering>
<excludes>
<exclude>**/build_DBinit.bash</exclude>
</excludes>
</resource>
<resource>
<directory>src/main/resources</directory>
<filtering>false</filtering>
</resource>
</resources>
<plugins>
<!--<plugin>-->
<!--<groupId>org.codehaus.mojo</groupId>-->
<!--<artifactId>templating-maven-plugin</artifactId>-->
<!--<version>1.0-alpha-3</version>-->
<!--<executions>-->
<!--<execution>-->
<!--<id>filter-src</id>-->
<!--<phase>generate-sources</phase>-->
<!--<goals>-->
<!--<goal>filter-sources</goal>-->
<!--</goals>-->
<!--<configuration>-->
<!--<sourceDirectory>${basedir}/src/main/java-templates</sourceDirectory> <!– Defaults –>-->
<!--<outputDirectory>${project.build.directory}/generated-sources/java-templates</outputDirectory>-->
<!--</configuration>-->
<!--</execution>-->
<!--</executions>-->
<!--</plugin>-->
<!-- FindBugs at verify lifecycle phase. Generate XML and HTML report. -->
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>findbugs-maven-plugin</artifactId>
<version>3.0.2</version>
<configuration>
<xmlOutput>true</xmlOutput>
<effort>Max</effort>
<failOnError>false</failOnError>
<!--<threshold>Low</threshold>-->
<includeTests>true</includeTests>
<!--<maxRank>16</maxRank>-->
<findbugsXmlOutputDirectory>${project.build.directory}/findbugs</findbugsXmlOutputDirectory>
</configuration>
<executions>
<execution>
<id>run-findbugs</id>
<phase>verify</phase>
<goals>
<goal>check</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.8.1</version>
<configuration>
<source>1.8</source>
<target>1.8</target>
<!--<compilerArgument>-Xlint:all</compilerArgument>-->
<!--<showWarnings>true</showWarnings>-->
<!--<showDeprecation>true</showDeprecation>-->
</configuration>
</plugin>
<!--Output test results to files so that they can be read by continuous integration servers-->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
<version>2.17</version>
<configuration>
<redirectTestOutputToFile>true</redirectTestOutputToFile>
<reportsDirectory>shippable/testresults</reportsDirectory>
<reportFormat>plain</reportFormat> <!-- as opposed to "brief". print the name of each test run -->
<!--<argLine>-agentlib:jdwp=transport=dt_socket,server=n,address=127.0.0.1:5005,suspend=y</argLine>-->
<test>${test}</test>
<!-- Only run tests in the TEST_CONFIG class. -->
<failIfNoSpecifiedTests>false</failIfNoSpecifiedTests>
</configuration>
<dependencies>
<dependency>
<groupId>org.apache.maven.surefire</groupId>
<artifactId>surefire-junit4</artifactId>
<version>2.17</version>
</dependency>
</dependencies>
</plugin>
<plugin>
<artifactId>maven-clean-plugin</artifactId>
<version>2.6.1</version>
<configuration>
<filesets>
<fileset>
<directory>shippable</directory>
<followSymlinks>false</followSymlinks>
</fileset>
</filesets>
</configuration>
</plugin>
</plugins>
</build>
<profiles>
<!--Create the libext and alldeps jars-->
<profile>
<id>DoAll</id>
<activation>
<!--Doesn't work; see https://stackoverflow.com/questions/5309379/how-to-keep-maven-profiles-which-are-activebydefault-active-even-if-another-prof-->
<!--<activeByDefault>true</activeByDefault>-->
<property>
<name>!NoDoAll</name>
</property>
</activation>
<build>
<plugins>
<!-- Copy all original dependency JARs (including recursive dependencies) into target/libext
Note that the original JARs will have overlapping code, e.g.,
explicit deps accumulo-core and hadoop-hdfs may have a transitive dep commons-math. The commons-math dep is stored twice.
To store the dep once, use the build-single method. -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-dependency-plugin</artifactId>
<version>2.9</version>
<executions>
<execution>
<id>copy-dependencies</id>
<phase>package</phase>
<goals>
<goal>copy-dependencies</goal>
</goals>
<configuration>
<outputDirectory>${project.build.directory}/libext</outputDirectory>
<type>jar</type>
<includeScope>runtime</includeScope>
<!-- Don't include the test scope - we don't need those classes for dependencies. -->
<!--<includeScope>compile</includeScope> Only adds the dep jdk-tools.jar, which has useless stuff provided by any jdk installation. -->
</configuration>
</execution>
</executions>
</plugin>
<plugin> <!-- Create a super-JAR out of the JARs for every dependency in target/libext -->
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-assembly-plugin</artifactId>
<version>2.5.4</version>
<executions>
<execution>
<id>libext_assembly</id>
<phase>package</phase>
<goals>
<goal>single</goal>
</goals>
<configuration>
<descriptors>
<descriptor>${basedir}/src/assembly/libext_assembly.xml</descriptor>
</descriptors>
<outputDirectory>${project.build.directory}</outputDirectory>
<!--<finalName>${DBinit.path.libextZip}</finalName>-->
<appendAssemblyId>true</appendAssemblyId>
</configuration>
</execution>
<execution>
<id>all-assembly</id>
<phase>install</phase>
<goals>
<goal>single</goal>
</goals>
<configuration>
<descriptors>
<descriptor>src/assembly/dist_assembly.xml</descriptor>
</descriptors>
<finalName>graphulo-${project.version}</finalName>
<appendAssemblyId>true</appendAssemblyId>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-shade-plugin</artifactId>
<version>2.4.1</version>
<executions>
<execution>
<id>alldeps</id>
<phase>package</phase>
<goals>
<goal>shade</goal>
</goals>
<configuration>
<shadedArtifactAttached>true</shadedArtifactAttached>
<shadedClassifierName>alldeps</shadedClassifierName>
<minimizeJar>true</minimizeJar>
<artifactSet>
<excludes>
<exclude>org.apache.accumulo:*</exclude>
<exclude>org.apache.hadoop:*</exclude>
<exclude>org.apache.zookeeper:*</exclude>
<exclude>com.thoughtworks.paranamer:paranamer</exclude>
<exclude>com.google.code.findbugs:jsr305*</exclude>
<exclude>com.google.protobuf:protobuf-java</exclude>
<exclude>commons-beanutils:commons-beanutils*</exclude>
<exclude>commons-net:commons-net</exclude>
<exclude>commons-httpclient:commons-httpclient</exclude>
<exclude>commons-digester:commons-digester</exclude>
<exclude>commons-io:commons-io</exclude>
<exclude>io.netty:netty</exclude>
<exclude>javax.xml.bind:jaxb-api</exclude>
<exclude>javax.servlet:servlet-api</exclude>
<exclude>javax.servlet.jsp:jsp-api</exclude>
<exclude>org.apache.commons:commons-compress</exclude>
<exclude>asm:asm</exclude>
<exclude>org.apache.httpcomponents:*</exclude>
<exclude>org.apache.avro:avro</exclude>
<exclude>org.glassfish.grizzly:*</exclude>
<exclude>org.codehaus.plexus:plexus-utils</exclude>
<exclude>org.mortbay.jetty:*</exclude>
<exclude>org.apache.commons:commons-vfs2</exclude>
<exclude>com.beust:jcommander</exclude>
<exclude>org.xerial.snappy:snappy-java</exclude>
<exclude>com.sun.xml.bind:jaxb-impl</exclude>
<exclude>com.sun.jersey:jersey-server</exclude>
<exclude>com.sun.jersey:jersey-json</exclude>
<exclude>com.sun.jersey:jersey-core</exclude>
<exclude>org.codehaus.jackson:jackson*</exclude>
</excludes>
</artifactSet>
<filters>
<filter>
<artifact>javax.servlet:servlet-api</artifact>
<excludes>
<exclude>javax/servlet/**</exclude>
<exclude>javax/servlet/*.properties</exclude>
<exclude>javax/servlet/http/*.properties</exclude>
</excludes>
</filter>
<filter>
<artifact>javax.servlet:*</artifact>
<excludes>
<exclude>javax/servlet/jsp/resources/**</exclude>
</excludes>
</filter>
<filter>
<artifact>*:*</artifact>
<excludes>
<exclude>META-INF/maven/**</exclude>
<exclude>javax/servlet/*.properties</exclude>
<exclude>javax/servlet/http/*.properties</exclude>
</excludes>
</filter>
<filter>
<artifact>*:*</artifact>
<excludes>
<exclude> META-INF/services/com.sun.jersey.*</exclude>
<exclude>META-INF/maven/**</exclude>
</excludes>
</filter>
<filter>
<artifact>org.apache.commons:commons-math3</artifact>
<includes>
<include>**</include>
</includes>
</filter>
<filter>
<artifact>org.json:org.json</artifact>
<includes>
<include>**</include>
</includes>
</filter>
<filter>
<artifact>org.apache.htrace:*</artifact>
<includes>
<include>**</include>
</includes>
<!--<excludes>-->
<!--<exclude>org/junit/experimental/**</exclude>-->
<!--</excludes>-->
</filter>
</filters>
</configuration>
</execution>
</executions>
</plugin>
<!-- Ensure this is the last step before the linux-specific profile for the message to be seen by non-linux users. -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-antrun-plugin</artifactId>
<executions>
<execution>
<phase>package</phase>
<goals>
<goal>run</goal>
</goals>
<configuration>
<tasks>
<chmod file="${basedir}/src/assembly/build_DBinit/build_DBinit.bash" perm="755" />
<echo>If you are on linux and have 'zip' installed, DBinit will build automatically.</echo>
<echo>If not building on linux, you may not be able to build DBinit.m.</echo>
<echo>Try and execute the following script once: (do not move the file)</echo>
<echo> ${basedir}/src/assembly/build_DBinit/build_DBinit.bash</echo>
</tasks>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-javadoc-plugin</artifactId>
<version>2.10.3</version>
<configuration>
<links>
<link>https://accumulo.apache.org/${accumulo.version.majorminor}/apidocs</link>
</links>
<detectLinks>true</detectLinks>
<failOnError>false</failOnError> <!-- Don't care if some part fails -->
</configuration>
<executions>
<execution>
<id>gen-javadoc</id>
<phase>install</phase>
<goals>
<goal>javadoc</goal>
</goals>
</execution>
</executions>
</plugin>
</plugins>
</build>
</profile>
<!-- This profile stops javadoc from complaining on mvn install. -->
<profile>
<id>JDK 8 Build</id>
<activation>
<jdk>[1.8,)</jdk>
</activation>
<properties>
<additionalparam>-Xdoclint:none</additionalparam>
</properties>
</profile>
<profile>
<id>linux-build-DBinit</id>
<activation>
<os>
<family>unix</family>
</os>
<property>
<name>!NoDoAll</name>
</property>
</activation>
<build>
<plugins>
<!-- Create DBinit.m on linux systems. -->
<plugin>
<artifactId>exec-maven-plugin</artifactId>
<groupId>org.codehaus.mojo</groupId>
<version>1.6.0</version>
<!-- <version>1.3.2</version> -->
<executions>
<execution>
<id>Build DBinit</id>
<phase>package</phase>
<goals>
<goal>exec</goal>
</goals>
<configuration>
<executable>/bin/bash</executable>
<!-- <executable>${basedir}/src/assembly/build_DBinit/build_DBinit.bash</executable>
<workingDirectory>${project.build.outputDirectory}</workingDirectory> -->
<arguments>
<argument>${project.build.outputDirectory}/build_DBinit/build_DBinit.bash</argument>
<argument>${project.build.finalName}.jar</argument>
<argument>${project.build.directory}/${DBinit.path.libextFolder}</argument>
<argument>${DBinit.path.mpath}</argument>
<argument>${project.build.directory}/${DBinit.path.outputFile}</argument>
<argument>${project.build.directory}/${DBinit.path.libextZip}.zip</argument>
</arguments>
</configuration>
</execution>
</executions>
</plugin>
</plugins>
</build>
</profile>
<!--Bundle Everything, including Accumulo classes.-->
<profile>
<id>BundleAll</id>
<activation>
<property>
<name>BundleAll</name>
</property>
</activation>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-shade-plugin</artifactId>
<version>2.4.1</version>
<executions>
<execution>
<id>all</id>
<phase>package</phase>
<goals>
<goal>shade</goal>
</goals>
<configuration>
<shadedArtifactAttached>true</shadedArtifactAttached>
<shadedClassifierName>all</shadedClassifierName>
<minimizeJar>true</minimizeJar>
<artifactSet>
<!--<excludes>-->
<!--<exclude>org.apache.accumulo:*</exclude>-->
<!--</excludes>-->
</artifactSet>
<filters>
<filter>
<artifact>org.apache.htrace:*</artifact>
<includes>
<include>**</include>
</includes>
<!--<excludes>-->
<!--<exclude>org/junit/experimental/**</exclude>-->
<!--</excludes>-->
</filter>
<filter>
<artifact>commons-logging:commons-logging</artifact>
<includes>
<include>org/apache/commons/logging/**</include>
</includes>
</filter>
</filters>
</configuration>
</execution>
</executions>
</plugin>
</plugins>
</build>
</profile>
</profiles>
<dependencies>
<dependency>
<groupId>org.apache.accumulo</groupId>
<artifactId>accumulo-core</artifactId>
<version>${accumulo.version}</version>
</dependency>
<dependency>
<groupId>org.apache.hadoop</groupId>
<artifactId>hadoop-common</artifactId>
<version>${hadoop.version}</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.12</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.apache.accumulo</groupId>
<artifactId>accumulo-minicluster</artifactId>
<version>${accumulo.version}</version>
<scope>test</scope>
</dependency>
<!-- Replaces Accumulo dependency on Apache Commons 3.2, which does not use Java Generics. -->
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-collections4</artifactId>
<version>${collections4.version}</version>
</dependency>
<!-- Used by some JSON functions in D4M Matlab. -->
<dependency>
<groupId>org.json</groupId>
<artifactId>org.json</artifactId>
<version>${json.version}</version>
<scope>runtime</scope>
<optional>true</optional>
</dependency>
<!-- Upgrading to 4.2.0-incubating is impossible without upgrading Zipkin inside Accumulo. -->
<dependency>
<groupId>org.apache.htrace</groupId>
<artifactId>htrace-zipkin</artifactId>
<version>${htrace.version}</version>
<scope>runtime</scope>
<optional>true</optional>
</dependency>
<dependency>
<groupId>com.googlecode.matrix-toolkits-java</groupId>
<artifactId>mtj</artifactId>
<version>1.0.4</version>
</dependency>
<!-- https://mvnrepository.com/artifact/org.postgresql/postgresql -->
<dependency>
<groupId>org.postgresql</groupId>
<artifactId>postgresql</artifactId>
<version>42.2.10</version>
</dependency>
<!-- MySQL connector jar -->
<!-- https://mvnrepository.com/artifact/mysql/mysql-connector-java -->
<dependency>
<groupId>mysql</groupId>
<artifactId>mysql-connector-java</artifactId>
<version>5.1.48</version>
</dependency>
</dependencies>
</project>