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GC_RR.sh
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bedtools intersect -a galgal7b_GC.50kb.fa -b /project-whj/lzx/0516_chicken_recombrate/predictt_result/CH_chr1-39_maf05geno02.txt -wao > CH.GC.window.intersect.bed
bedtools intersect -a galgal7b_GC.50kb.fa -b /project-whj/lzx/0516_chicken_recombrate/predictt_result/GGS_chr1-39_maf05geno02.txt -wao > GGS.GC.window.intersect.bed
bedtools intersect -a galgal7b_GC.50kb.fa -b /project-whj/lzx/0516_chicken_recombrate/predictt_result/LX_chr1-39_maf05geno02.txt -wao > LX.GC.window.intersect.bed
bedtools intersect -a galgal7b_GC.50kb.fa -b /project-whj/lzx/0516_chicken_recombrate/predictt_result/NX_chr1-39_maf05geno02.txt -wao > NX.GC.window.intersect.bed
bedtools intersect -a galgal7b_GC.50kb.fa -b /project-whj/lzx/0516_chicken_recombrate/predictt_result/JNBR_chr1-39_maf05geno02.txt -wao > JNBR.GC.window.intersect.bed
bedtools intersect -a galgal7b_GC.50kb.fa -b /project-whj/lzx/0516_chicken_recombrate/predictt_result/WL_chr1-39_maf05geno02.txt -wao > WL.GC.window.intersect.bed