bioinf-commons 0.0.9 version

Author: olegs

CHANGES.txt

@@ -3,6 +3,30 @@ bioinf-commons changelog
 
 Here you can see the full list of changes between each release.
 
+Version 0.0.9
+-------------
+
+Released on Apr 8, 2020
+
+ - Restructured codebase.
+
+   `org.jetbrains.bio.dataframe` - Pandas like dataframe
+   `org.jetbrains.bio.experiment` - Named computation - experiment and resources configuration
+   `org.jetbrains.bio.genome` - APIs for working with Genome, Sequence, Genes, Ontologies etc.
+     * `containers` - Genome location sets API
+     * `coverage` - Genome coverage API, paired/single end, fragment size estimation
+     * `data` - Describe any kind of dataset resources including replicates
+     * `format` - Bam (including Bisulfite sequencing), Bed, Fasta, Fastq, 2bit formats support
+     * `methylome` - API to work with methylomes - filtration, statistics, aggregations etc.
+     * `query` - Named functions - queries with caching capabilities
+     * `sampling` - API for genomic sampling - sequencies, locations, etc.
+     * `sequence` - Genome sequence API
+     Also: Biomart, Ensembl, UCSC support, Genomes and Genes annotations
+   `org.jetbrains.bio.statistics` - Statistics utilities including distributions mixtures, hmms and hypothesis testing
+   `org.jetbrains.bio.util` - Cancellable computations, progress reporters, logging utilities, and other utils
+
+ - Switched to SL4J and Logback for logging
+
 Version 0.0.8
 -------------
 

README.md

@@ -24,7 +24,7 @@ repositories {
 }
 
 dependencies {
-    compile 'org.jetbrains.bio:bioinf-commons:0.0.8'
+    compile 'org.jetbrains.bio:bioinf-commons:0.0.9'
 }
 ```
 

gradle.properties

@@ -1,2 +1,2 @@
 groupId=org.jetbrains.bio
-version=0.0.8
+version=0.0.9