From 1b62e0896f789c562c3f9cd671f5cdf6c59e64f2 Mon Sep 17 00:00:00 2001
From: Konrad Rokicki <rokickik@janelia.hhmi.org>
Date: Tue, 9 Apr 2024 15:28:45 -0400
Subject: [PATCH] added links to published neuronbridge paper

---
 src/components/About.jsx                | 3 ++-
 src/components/Help/HelpContents.jsx    | 6 +++---
 src/components/MatchModal/Citations.jsx | 4 ++--
 src/components/References.jsx           | 6 +++---
 4 files changed, 10 insertions(+), 9 deletions(-)

diff --git a/src/components/About.jsx b/src/components/About.jsx
index 85a28da7..e6ea1d17 100644
--- a/src/components/About.jsx
+++ b/src/components/About.jsx
@@ -16,7 +16,8 @@ export default function About() {
         quick to look up by identifier. You can also upload your own data and match it against these public data sets. 
       </Paragraph>
       <Paragraph>
-        A preprint describing this software in detail is <a href="https://doi.org/10.1101/2022.07.20.500311">available on bioRxiv</a>.
+        More information about the software infrastructure is available in our <a href="https://doi.org/10.1186/s12859-024-05732-7">published paper</a> and {" "}
+        <a href="https://aws.amazon.com/blogs/architecture/scaling-neuroscience-research-on-aws/">AWS blog post</a>.
       </Paragraph>
 
       <Row gutter={20}>
diff --git a/src/components/Help/HelpContents.jsx b/src/components/Help/HelpContents.jsx
index 522766ce..af9c9672 100644
--- a/src/components/Help/HelpContents.jsx
+++ b/src/components/Help/HelpContents.jsx
@@ -203,9 +203,9 @@ export default function HelpContents({ scroll }) {
               data currently in NeuronBridge.
             </p>
             <p>
-              A preprint including more details is{" "}
-              <a href="https://doi.org/10.1101/2022.07.20.500311">
-                available on bioRxiv
+              More details are available in the {" "}
+              <a href="https://doi.org/10.1186/s12859-024-05732-7">
+                NeuronBridge paper
               </a>
               .
             </p>
diff --git a/src/components/MatchModal/Citations.jsx b/src/components/MatchModal/Citations.jsx
index 30ae1e83..72d66adc 100644
--- a/src/components/MatchModal/Citations.jsx
+++ b/src/components/MatchModal/Citations.jsx
@@ -40,8 +40,8 @@ export default function Citations({ match, mask, matchRank, matchesTotal }) {
         <h3>Cite NeuronBridge</h3>
         <ul>
           <li>
-            <a href="https://doi.org/10.1101/2022.07.20.500311">
-              Clements et al., 2022
+            <a href="https://doi.org/10.1186/s12859-024-05732-7">
+              Clements et al., 2024
             </a>
           </li>
         </ul>
diff --git a/src/components/References.jsx b/src/components/References.jsx
index 0eb18a5f..4fa214ac 100644
--- a/src/components/References.jsx
+++ b/src/components/References.jsx
@@ -7,7 +7,7 @@ export default function References() {
 
       <dt>NeuronBridge</dt>
       <dd>
-        <a href="https://doi.org/10.1101/2022.07.20.500311">Clements et al., 2022</a>
+        <a href="https://doi.org/10.1186/s12859-024-05732-7">Clements et al., 2024</a>
       </dd>
 
       <dt>Neuron matching algorithms</dt>
@@ -36,13 +36,13 @@ export default function References() {
         <a href="https://dx.doi.org/10.1016/j.celrep.2012.09.011">Jenett et al., 2012; for Janelia Gen1 GAL4</a>
       </dd>
       <dd>
-        <a href="https://doi.org/10.1101/198648"> Tirian and Dickson, 2017; for VT Gen1 GAL4</a>
+        <a href="https://doi.org/10.1101/198648">Tirian and Dickson, 2017; for VT Gen1 GAL4</a>
       </dd>
       <dd>
         <a href="https://doi.org/10.1534/genetics.118.300682"> Dionne et al., 2018; for Janelia hemidrivers</a>
       </dd>
       <dd>
-        <a href="https://doi.org/10.1101/198648"> Tirian and Dickson, 2017; for VT hemidrivers</a>
+        <a href="https://doi.org/10.1101/198648">Tirian and Dickson, 2017; for VT hemidrivers</a>
       </dd>
 
       <dt>EM-LM unification template</dt>