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Moritz-Alexander-KernMoritz-Alexander-Kern
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Release 0.3.0 (#65)
* update copyright year to 2023 * bump version * update install guide
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‎LICENSE.txt

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Copyright (c) 2017-2022, Institute of Neuroscience and Medicine (INM-6), Forschungszentrum Jülich
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Copyright (c) 2017-2023, Institute of Neuroscience and Medicine (INM-6), Forschungszentrum Jülich
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All rights reserved.
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Redistribution and use in source and binary forms, with or without

‎README.md

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For instructions on installing Viziphant, please see https://viziphant.readthedocs.io/en/latest/install.html
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#### Copyright
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:copyright: 2017-2022 by the [Viziphant team](doc/authors.rst).
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:copyright: 2017-2023 by the [Viziphant team](doc/authors.rst).
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#### License
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BSD 3-Clause License, see [LICENSE.txt](LICENSE.txt) for details.

‎doc/release_notes.rst

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Release Notes
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=============
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Viziphant 0.3.0 release notes
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*****************************
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Documentation
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-------------
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* Fixed math display for equations in docs by using mathjax as renderer #59
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* Remove title "Viziphant" from navigation bar #60
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* Fix documentation, remove version cap on sphinxcontrib-bibtex, add new citation style #57
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* Fix navigation bar not showing up in documentation #64
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New functionality and features
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------------------------------
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* Add parameter to exclude labels from plotting in add_event function. #50
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* Add limit check to add_event function to prevent labels outside bounds of figure. #49
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* GPFA function plot_dimensions_vs_time passing neo.Events to the plotting function to make it more robust and flexible #52
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Bug fixes
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---------
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* Fix bug in add_events where only the last event was plotted. #53
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* Fix bug with newer versions of matplotlib by replacing gca() with add_subplot(). #56
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Miscellaneous
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-------------
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* CI: update GitHub actions commands, remove deprecated commands #58
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* Add first unit test for ASSET plot_synchronous_events #63
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Selected dependency changes
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---------------------------
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* Update python version, drop support for python 3.6 and 3.7 #51 #62
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* Update to quantities >0.14.0 #61
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Viziphant 0.2.0 release notes
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*****************************
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‎viziphant/VERSION

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0.2.0
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0.3.0

‎viziphant/__init__.py

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Elephant, which is a package for the analysis of neurophysiological data,
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based on Neo.
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"""
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# Copyright 2017-2022 by the Viziphant team, see `doc/authors.rst`.
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# Copyright 2017-2023 by the Viziphant team, see `doc/authors.rst`.
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# License: Modified BSD, see LICENSE.txt for details.
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from . import (asset, events, gpfa, patterns, rasterplot,

‎viziphant/asset.py

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plot_synchronous_events
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"""
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# Copyright 2017-2022 by the Viziphant team, see `doc/authors.rst`.
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# Copyright 2017-2023 by the Viziphant team, see `doc/authors.rst`.
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# License: Modified BSD, see LICENSE.txt for details.
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‎viziphant/events.py

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add_event
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"""
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# Copyright 2017-2022 by the Viziphant team, see `doc/authors.rst`.
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# Copyright 2017-2023 by the Viziphant team, see `doc/authors.rst`.
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# License: Modified BSD, see LICENSE.txt.txt for details.
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x_lim_min, x_lim_max = axes[-1].get_xlim()
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if x_lim_max < x_lim_min:
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x_lim_min, x_lim_max = x_lim_max, x_lim_min
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if exclude is None:
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exclude = []
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‎viziphant/gpfa.py

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plot_cumulative_shared_covariance
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plot_transform_matrix
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"""
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# Copyright 2017-2022 by the Viziphant team, see `doc/authors.rst`.
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# Copyright 2017-2023 by the Viziphant team, see `doc/authors.rst`.
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# License: Modified BSD, see LICENSE.txt for details.
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import itertools

‎viziphant/patterns.py

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plot_patterns_statistics_lags
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"""
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# Copyright 2017-2022 by the Viziphant team, see `doc/authors.rst`.
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# Copyright 2017-2023 by the Viziphant team, see `doc/authors.rst`.
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# License: Modified BSD, see LICENSE.txt for details.
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from collections import defaultdict
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"""
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if axes is None:
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fig, axes = plt.subplots()
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# 'times' and 'lags' share the same units;
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# however, only lag units are of interest
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units = patterns[0]['lags'].units

‎viziphant/rasterplot.py

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rasterplot_rates
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"""
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# Copyright 2017-2022 by the Viziphant team, see `doc/authors.rst`.
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# Copyright 2017-2023 by the Viziphant team, see `doc/authors.rst`.
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# License: Modified BSD, see LICENSE.txt for details.
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import matplotlib.axes

‎viziphant/spike_train_correlation.py

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plot_cross_correlation_histogram
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"""
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# Copyright 2017-2022 by the Viziphant team, see `doc/authors.rst`.
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# Copyright 2017-2023 by the Viziphant team, see `doc/authors.rst`.
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# License: Modified BSD, see LICENSE.txt.txt for details.
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‎viziphant/spike_train_synchrony.py

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plot_spike_contrast
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"""
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# Copyright 2017-2022 by the Viziphant team, see `doc/authors.rst`.
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# Copyright 2017-2023 by the Viziphant team, see `doc/authors.rst`.
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# License: Modified BSD, see LICENSE.txt for details.
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import matplotlib.pyplot as plt

‎viziphant/statistics.py

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plot_instantaneous_rates_colormesh
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"""
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# Copyright 2017-2022 by the Viziphant team, see `doc/authors.rst`.
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# Copyright 2017-2023 by the Viziphant team, see `doc/authors.rst`.
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# License: Modified BSD, see LICENSE.txt.txt for details.
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import matplotlib.pyplot as plt

‎viziphant/unitary_event_analysis.py

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plot_ue
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"""
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# Copyright 2017-2022 by the Viziphant team, see `doc/authors.rst`.
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# Copyright 2017-2023 by the Viziphant team, see `doc/authors.rst`.
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# License: Modified BSD, see LICENSE.txt.txt for details.
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import numpy as np

‎viziphant/utils.py

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# Copyright 2017-2022 by the Viziphant team, see `doc/authors.rst`.
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# Copyright 2017-2023 by the Viziphant team, see `doc/authors.rst`.
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# License: Modified BSD, see LICENSE.txt for details.
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from elephant.utils import check_same_units as check_same_units_single

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