studies.html

---
layout: idr
title: Studies
redirect_from:
  - studies/
---
<!-- begin marketing header -->
<header class="marketing-hero">
    <div class="row homepage text-center">

        <div class="medium-12 columns">
            <img src="{{ "/img/logos/logo-idr-white.svg" | prepend: site.baseurl }}?{{ site.time | date: '%s%N' }}" alt="IDR logo" class="logo-hero" />
            <p class="hero-subheader small-10 medium-10 large-10 small-offset-1 medium-offset-1 large-offset-1">The Image Data Resource (IDR) is an online, public data repository which seeks to store, integrate and serve image datasets from published scientific studies. We have collected and are continuing to receive existing and newly created “reference image" datasets that are valuable resources for a broad community of users, either because they will be frequently accessed and cited or because they can serve as a basis for re-analysis and the development of new computational tools.</p>
            <br>
            <a href="/webclient/userdata/?experimenter=-1" class="large button sites-button">Take a look at the data</a>
        </div>
    </div>
</header>
<!-- end marketing header -->

{% assign releases=site.data.releases %}
{% assign sorted_studies = site.data.studies | sort: 'Study' %}
{% assign unique_studies = site.data.studies | map: 'Study' | uniq %}

<!-- begin Current Status section -->
<hr class="whitespace">
<div class="row column text-center">
    <h2>Current Status</h2>
</div>
<hr>
<div class="row">
    <div class="small-10 small-centered medium-10 medium-centered columns">
        <div class="row horizontal">
            <div>
<p>Currently, the IDR (version {{ releases.last["Code version"] }}, released on

{{ releases.last.Date }}) contains
<b>{{ releases.last["Size (TB)"] | round }} TB</b>
of multi-dimensional images consisting of
<b>{{ releases.last.Images | divided_by: 1000000 }} M</b> multi-dimensional 
images or
<b>{{ releases.last.Planes | divided_by: 1000000 }} M</b> individual 2D planes. IDR contains over <b>1 M</b> different experiments.
Data comes from <b>{{ unique_studies | size }}</b> studies on human, Drosophila,
budding and fission yeast, and mouse cells and tissue. Imaging modalities represented so far include high content screens, time-lapse imaging, whole slide histopathology, and super-resolution microscopy.
The resource receives over <b>2500</b> unique visits per week.</p>
            </div>
        </div>
    </div>
</div>

    <hr class="whitespace">
    <div class="row column text-center">
        <h2>Studies</h2>
    </div>
    <hr>

<div class="row">
    <div class="small-12 small-centered medium-12 medium-centered columns">
        <div class="row horizontal">
<table>
    <thead>
        <th>Study</th>
        <th>5D Images</th>
        <th>2D Planes</th>
        <th>Size (TB)</th>
        <th>Average dimensions (XYZCT)</th>
    </thead>
    <tbody>
    {% for row in sorted_studies %}
      {% if row.Container == "landing page" %}
        {% continue %}
      {% else %}
        <tr>
            {% if row.Container contains "screen" %}
              <td><a href="/webclient/?show=screen-{{ row["Internal ID"] }}">{{ row.Study }}/{{ row.Container }}</a></td>
            {% else %}
              <td><a href="/webclient/?show=project-{{ row["Internal ID"] }}">{{ row.Study }}/{{ row.Container }}</a></td>
            {% endif %}
            <td>{{ row["5D Images"] }} </td>
            <td>{{ row["Planes"] }} </td>
            <td>{{ row["Size (TB)"] | round: 2 }} </td>
            <td>{{ row["Avg. Image Dim (XYZCT)"] }} </td>
            <td></td>
        </tr>
      {% endif %}
    {% endfor %}
    </tbody>
</table>
</div>
</div>
</div>