- New version of architecture-setup: 3.1.13
- Updated config file: now includes OxoG for Collaboratory, as well as updates to other workflows' configurations.
- Changed path to server-tags to be absolute path, in mustache file.
- Added the begining of an OpenStack-specific config document.
- Fixed incorrect consonance version number in mustache file.
- Major changes:
- Support for non-Amazon clouds environments:
- Azure
- New script to create management certificates
- New Azure-specific questions in bootstrap script and in sysconfig
- OpenStack.
- New OpenStack-specific questions in bootstrap script and in sysconfig
- new sysconfig option "--os_env_name" to specify which OpenStack environment settings to use for a workflow.
- Azure
- Some documentation updates
- Spot-pricing for Amazon
- Many other smaller bug fixes.
- Minor documentation updates
- Added new "--keep_failed" option for generator to prevent failed workers from being reaped (useful for debugging)
- Fixed some logic bugs in generator related to updating the master config file.
- Minor updates to install_bootstrap (changed wording of questions, cleaned up some old code).
- Added version numbers to workflow names in descriptors in workflowlister.py
- Set reap_failed_workers and check_previous_job_hash to null in mustache template - these will be directly set by the generator.
- A number of smaller bug fixes.
- Updated documentation
- Added BWA tutorial
- Code fixes:
- Fixes for working with workflows that are stored in S3
- Reset "check_previous_job_hash" back to True
- Added BWA to workflow lister with new AMI ID
- Updated consonance version to 1.1-beta.rc.0
- Set "reap_failed_workers" to True in mustache template, so ALL workers will be reaped by default.
- Updated documentation
- Added "--force" option for generator which will change config/masterConfig.ini:check_previous_job_hash to false
- Cleaned up some of the code for provisioner/coordinator control
- Added new "job_results" sub command to "status" command to write jobs results (stdout or stderr) to files.
- Added a "--force" option to sysconfig
- update version of consonance (arch3) to 1.1-beta.6
- Pancancer template: Remove slack_token; fixed "youxia_reaper_parameters"; added "reap_failed_workers"
- updated workflow lister to only show HelloWorld (with new AMI ID) until other workflows are ready.