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Asking for providing the feature vectors #3

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n-tasnina opened this issue Feb 26, 2020 · 3 comments
Open

Asking for providing the feature vectors #3

n-tasnina opened this issue Feb 26, 2020 · 3 comments

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@n-tasnina
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I read your paper 'A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns'. I would like to reproduce the result from this paper by training the random forest and neural network model you provided here.
I would be glad if you could provide me the value of each feature (that you mentioned in Table 2: WGS feature types used in classifier) for PCAWG training and test datasets in a format that can directly be used to train and test the models. The feature vectors for the independent validation dataset would also be very helpful.

@primasanjaya
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Same here, I would like to reproduce your result, would you mind to give a feature vectors that you used in the experiment

@jjfeng
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jjfeng commented Jun 7, 2020

I would also like the feature vectors for reproducing results or the code for generating the feature vectors. Could you share it to us directly or upload it to the github?

@AlexCaneborg
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Same here, could you possibly provide the feature vectors used? Could you also possibly clarify the data format for the input?

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