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test1.json
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test1.json
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{
"tumor":
{
"path":"https://dcc.icgc.org/api/v1/download?fn=/PCAWG/reference_data/data_for_testing/HCC1143_ds/HCC1143.bam",
"class":"File"
},
"normal":
{
"path":"https://dcc.icgc.org/api/v1/download?fn=/PCAWG/reference_data/data_for_testing/HCC1143_ds/HCC1143_BL.bam",
"class":"File"
},
"refFrom":
{
"path":"https://dcc.icgc.org/api/v1/download?fn=/PCAWG/reference_data/pcawg-sanger/GRCh37d5_CGP_refBundle.tar.gz",
"class":"File"
},
"bbFrom":
{
"path":"https://dcc.icgc.org/api/v1/download?fn=/PCAWG/reference_data/pcawg-sanger/GRCh37d5_battenberg.tar.gz",
"class":"File"
},
"somatic_snv_mnv_tar_gz":
{
"path":"/mnt/output/somatic_snv_mnv_tar_gz",
"class":"File"
},
"somatic_cnv_tar_gz":
{
"path":"/mnt/output/somatic_cnv_tar_gz",
"class":"File"
},
"somatic_sv_tar_gz":
{
"path":"/mnt/output/somatic_sv_tar_gz",
"class":"File"
},
"somatic_indel_tar_gz":
{
"path":"/mnt/output/somatic_indel_tar_gz",
"class":"File"
},
"somatic_imputeCounts_tar_gz":
{
"path":"/mnt/output/somatic_imputeCounts_tar_gz",
"class":"File"
},
"somatic_genotype_tar_gz":
{
"path":"/mnt/output/somatic_genotype_tar_gz",
"class":"File"
},
"somatic_verifyBamId_tar_gz":
{
"path":"/mnt/output/somatic_verifyBamId_tar_gz",
"class":"File"
}
}