Adding converted markdowns.

Author: zivy

docs/publications.md

@@ -83,6 +83,23 @@ Ronald N.
 Germain](mailto:[email protected],[email protected])\]</span></span>
 
 <span class="csl-left-margin">\[7\]
+</span><span class="csl-right-inline">N. Yayon, V. R. Kedlian, L.
+Boehme, C. Suo, B. T. Wachter, R. T. Beuschel, O. Amsalem, K. Polanski,
+S. Koplev, E. Tuck, E. Dann, J. V. Hulle, S. Perera, T. Putteman, A. V.
+Predeus, M. Dabrowska, L. Richardson, C. Tudor, A. Y. Kreins, J.
+Engelbert, E. Stephenson, V. Kleshchevnikov, F. D. Rita, D. Crossland,
+M. Bosticardo, F. Pala, E. Prigmore, N.-J. Chipampe, M. Prete, L. Fei,
+K. To, R. A. Barker, X. He, F. V. Nieuwerburgh, O. A. Bayraktar, M.
+Patel, E. G. Davies, M. A. Haniffa, V. Uhlmann, L. D. Notarangelo, R. N.
+Germain, A. J. Radtke, J. C. Marioni, T. Taghon, and S. A. Teichmann, “A
+spatial human thymus cell atlas mapped to a continuous tissue axis,”
+*Nature*, vol. 635, pp. 708–718, 2024, doi:
+[10.1038/s41586-024-07944-6](https://doi.org/10.1038/s41586-024-07944-6).
+<span class="csl-block"> \[Corresponding authors: [Ronald N. Germain,
+Andrea J. Radtke, John C. Marioni, Tom Taghon, Sarah A.
+Teichmann]([email protected],[email protected],[email protected],[email protected],[email protected])\]</span></span>
+
+<span class="csl-left-margin">\[8\]
 </span><span class="csl-right-inline">A. Shapiro, N. W. S. Caballes, R.
 N. Vera, B. S. Klein, P. J. Brennan, Y.-F. Wu, and D. L. Wiesner,
 “<span class="nocase">Sensitization with Fungal Protease Allergen
@@ -93,7 +110,7 @@ doi:
 <span class="csl-block"> \[Corresponding authors: [Darin L.
 Wiesner](mailto:[email protected])\]</span></span>
 
-<span class="csl-left-margin">\[8\]
+<span class="csl-left-margin">\[9\]
 </span><span class="csl-right-inline">M. Vierhout, A. Ayoub, P. Ali, V.
 Kumaran, S. Naiel, T. Isshiki, J. F. Koenig, M. R. J. Kolb, and K. Ask,
 “A novel ex vivo approach for investigating profibrotic macrophage
@@ -103,7 +120,7 @@ Res Commun*, vol. 741, p. 151038, 2024, doi:
 <span class="csl-block"> \[Corresponding authors: [Kjetil
 Ask](mailto:[email protected])\]</span></span>
 
-<span class="csl-left-margin">\[9\]
+<span class="csl-left-margin">\[10\]
 </span><span class="csl-right-inline">M. Vierhout, A. Ayoub, P. Ali, V.
 Kumaran, S. Naiel, T. Isshiki, J. F. Koenig, M. R. J. Kolb, and K. Ask,
 “A novel ex vivo approach for investigating profibrotic macrophage
@@ -113,7 +130,7 @@ doi:
 <span class="csl-block"> \[Corresponding authors: [Kjetil
 Ask](mailto:[email protected])\]</span></span>
 
-<span class="csl-left-margin">\[10\]
+<span class="csl-left-margin">\[11\]
 </span><span class="csl-right-inline">E. M. Quardokus, D. C. Saunders,
 E. McDonough, J. W. Hickey, C. Werlein, C. Surrette, P. Rajbhandari, A.
 M. Casals, H. Tian, L. Lowery, E. K. Neumann, F. Björklund, T. V.
@@ -129,7 +146,7 @@ pp. 1174–1178, 2023, doi:
 <span class="csl-block"> \[Corresponding authors: [Andrea J.
 Radtke](mailto:[email protected])\]</span></span>
 
-<span class="csl-left-margin">\[11\]
+<span class="csl-left-margin">\[12\]
 </span><span class="csl-right-inline">A.-M. Globig, S. Zhao, J.
 Roginsky, V. I. Maltez, J. Guiza, N. Avina-Ochoa, M. Heeg, F. Araujo
 Hoffmann, O. Chaudhary, J. Wang, G. Senturk, D. Chen, C. O’Connor, S.
@@ -140,7 +157,7 @@ exhaustion,” *Nature*, vol. 622, no. 7982, pp. 383–392, Oct. 2023, doi:
 <span class="csl-block"> \[Corresponding authors: [Susan M.
 Kaech](mailto:[email protected])\]</span></span>
 
-<span class="csl-left-margin">\[12\]
+<span class="csl-left-margin">\[13\]
 </span><span class="csl-right-inline">J. Gu, A. Iyer, B. Wesley, A.
 Taglialatela, G. Leuzzi, S. Hangai, A. Decker, R. Gu, N. Klickstein, Y.
 Shuai, K. Jankovic, L. Parker-Burns, Y. Jin, J. Y. Zhang, J. Hong, S.
@@ -151,15 +168,15 @@ multi-omic phenotypes in cells and tissue,” *bioRxiv*, 2023, doi:
 <span class="csl-block"> \[Corresponding authors: [Jellert T.
 Gaublomme](mailto:[email protected])\]</span></span>
 
-<span class="csl-left-margin">\[13\]
+<span class="csl-left-margin">\[14\]
 </span><span class="csl-right-inline">L. Arakkal, “IBEX: A user-friendly
 and open-source solution for high-plex immunostaining,” *Nat Rev
 Immunol*, 2023, doi:
 [10.1038/s41577-023-00963-w](https://doi.org/10.1038/s41577-023-00963-w).
 <span class="csl-block"> \[Corresponding authors: [Leanne
 Arakkal](mailto:[email protected])\]</span></span>
 
-<span class="csl-left-margin">\[14\]
+<span class="csl-left-margin">\[15\]
 </span><span class="csl-right-inline">N. Yayon, V. R. Kedlian, L.
 Boehme, C. Suo, B. Wachter, R. T. Beuschel, O. Amsalem, K. Polanski, S.
 Koplev, E. Tuck, E. Dann, J. V. Hulle, S. Perera, T. Putteman, A. V.
@@ -176,7 +193,7 @@ spatial human thymus cell atlas mapped to a continuous tissue axis,”
 Andrea J. Radtke, John C. Marioni, Tom Taghon, Sarah A.
 Teichmann](mailto:[email protected],[email protected],[email protected],[email protected],[email protected])\]</span></span>
 
-<span class="csl-left-margin">\[15\]
+<span class="csl-left-margin">\[16\]
 </span><span class="csl-right-inline">Q. Xu, P. Milanez-Almeida, A. J.
 Martins, A. J. Radtke, K. B. Hoehn, C. Oguz, J. Chen, C. Liu, J. Tang,
 G. Grubbs, S. Stein, S. Ramelli, J. Kabat, H. Behzadpour, M. Karkanitsa,
@@ -193,7 +210,7 @@ vol. 24, no. 1, pp. 186–199, 2023, doi:
 Schwartzberg, Kalpana
 Manthiram](mailto:[email protected],[email protected])\]</span></span>
 
-<span class="csl-left-margin">\[16\]
+<span class="csl-left-margin">\[17\]
 </span><span class="csl-right-inline">T. Kudo, A. M. Meireles, R.
 Moncada, Y. Chen, P. Wu, J. Gould, X. Hu, O. Kornfeld, R. Jesudason, C.
 Foo, B. Höckendorf, H. C. Bravo, J. P. Town, R. Wei, A. Rios, V.
@@ -206,7 +223,7 @@ tissues with PerturbView,” *bioRxiv*, 2023, doi:
 <span class="csl-block"> \[Corresponding authors: [Aviv Regev, Eric
 Lubeck](mailto:[email protected],[email protected])\]</span></span>
 
-<span class="csl-left-margin">\[17\]
+<span class="csl-left-margin">\[18\]
 </span><span class="csl-right-inline">J. W. Hickey, E. K. Neumann, A. J.
 Radtke, J. M. Camarillo, R. T. Beuschel, A. Albanese, E. McDonough, J.
 Hatler, A. E. Wiblin, J. Fisher, J. Croteau, E. C. Small, A. Sood, R. M.
@@ -220,7 +237,7 @@ Methods*, vol. 19, no. 2, pp. 284–295, 2022, doi:
 Sinem K.
 Saka](mailto:[email protected],[email protected])\]</span></span>
 
-<span class="csl-left-margin">\[18\]
+<span class="csl-left-margin">\[19\]
 </span><span class="csl-right-inline">N. Richoz, Z. K. Tuong, K. W.
 Loudon, E. Patiño-Martínez, J. R. Ferdinand, A. Portet, K. R. Bashant,
 E. Thevenon, F. Rucci, T. Hoyler, T. Junt, M. J. Kaplan, R. M. Siegel,
@@ -232,7 +249,7 @@ no. 21, p. e159751, 2022, doi:
 Menna R.
 Clatworthy](mailto:[email protected],[email protected])\]</span></span>
 
-<span class="csl-left-margin">\[19\]
+<span class="csl-left-margin">\[20\]
 </span><span class="csl-right-inline">A. J. Radtke, C. J. Chu, Z. Yaniv,
 L. Yao, J. Marr, R. T. Beuschel, H. Ichise, A. Gola, J. Kabat, B.
 Lowekamp, E. Speranza, J. Croteau, N. Thakur, D. Jonigk, J. Davis, J. M.
@@ -244,7 +261,7 @@ chemical bleaching method for high-content imaging of diverse tissues,”
 Ronald N.
 Germain](mailto:[email protected],[email protected])\]</span></span>
 
-<span class="csl-left-margin">\[20\]
+<span class="csl-left-margin">\[21\]
 </span><span class="csl-right-inline">A. J. Radtke, E. Postovalova, A.
 Varlamova, A. Bagaev, M. Sorokina, O. Kudryashova, M. Meerson, M.
 Polyakova, I. Galkin, V. Svekolkin, S. Isaev, G. Perelman, Y. Lozinsky,
@@ -259,7 +276,7 @@ multiomic atlas of human normal and follicular lymphoma lymph nodes,”
 <span class="csl-block"> \[Corresponding authors: [Andrea J.
 Radtke](mailto:[email protected])\]</span></span>
 
-<span class="csl-left-margin">\[21\]
+<span class="csl-left-margin">\[22\]
 </span><span class="csl-right-inline">E. Madissoon, A. J. Oliver, V.
 Kleshchevnikov, A. Wilbrey-Clark, K. Polanski, A. R. Orsi, L. Mamanova,
 L. Bolt, N. Richoz, R. Elmentaite, J. P. Pett, N. Huang, P. He, M.
@@ -273,7 +290,7 @@ lung reveals a novel immune cell survival niche,” *bioRxiv*, 2021, doi:
 Kerstin B.
 Meyer](mailto:[email protected],[email protected])\]</span></span>
 
-<span class="csl-left-margin">\[22\]
+<span class="csl-left-margin">\[23\]
 </span><span class="csl-right-inline">Z. K. Tuong, K. W. Loudon, B.
 Berry, N. Richoz, J. Jones, X. Tan, Q. Nguyen, A. George, S. Hori, S.
 Field, A. G. Lynch, K. Kania, P. Coupland, A. Babbage, R. Grenfell, T.
@@ -286,7 +303,7 @@ p. 110132, 2021, doi:
 R.
 Clatworthy](mailto:[email protected],[email protected])\]</span></span>
 
-<span class="csl-left-margin">\[23\]
+<span class="csl-left-margin">\[24\]
 </span><span class="csl-right-inline">C. R. Stoltzfus, J. Filipek, B. H.
 Gern, B. E. Olin, J. M. Leal, Y. Wu, M. R. Lyons-Cohen, J. Y. Huang, C.
 L. Paz-Stoltzfus, C. R. Plumlee, T. Pöschinger, K. B. Urdahl, M. Perro,
@@ -297,7 +314,7 @@ no. 3, p. 107523, 2020, doi:
 <span class="csl-block"> \[Corresponding authors: [Michael Y.
 Gerner](mailto:[email protected])\]</span></span>
 
-<span class="csl-left-margin">\[24\]
+<span class="csl-left-margin">\[25\]
 </span><span class="csl-right-inline">A. Gola, M. G. Dorrington, E.
 Speranza, C. Sala, R. M. Shih, A. J. Radtke, H. S. Wong, A. P. Baptista,
 J. M. Hernandez, G. Castellani, I. D. C. Fraser, and R. N. Germain,
@@ -307,7 +324,7 @@ J. M. Hernandez, G. Castellani, I. D. C. Fraser, and R. N. Germain,
 <span class="csl-block"> \[Corresponding authors: [Anita Gola, Ronald N.
 Germain](mailto:[email protected],[email protected])\]</span></span>
 
-<span class="csl-left-margin">\[25\]
+<span class="csl-left-margin">\[26\]
 </span><span class="csl-right-inline">A. J. Radtke, E. Kandov, B.
 Lowekamp, E. Speranza, C. J. Chu, A. Gola, N. Thakur, R. Shih, L. Yao,
 Z. R. Yaniv, R. T. Beuschel, J. Kabat, J. Croteau, J. Davis, J. M.
@@ -320,7 +337,7 @@ vol. 117, no. 52, pp. 33455–33465, 2020, doi:
 Ronald N.
 Germain](mailto:[email protected],[email protected])\]</span></span>
 
-<span class="csl-left-margin">\[26\]
+<span class="csl-left-margin">\[27\]
 </span><span class="csl-right-inline">E. Speranza, J. N. Purushotham, J.
 R. Port, B. Schwarz, M. Flagg, B. N. Williamson, F. Feldmann, M. Singh,
 L. Pérez-Pérez, G. L. Sturdevant, L. M. Roberts, A. Carmody, J. E.