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Refining the threshold for total_umis #360

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brianraymor opened this issue Aug 2, 2019 · 0 comments
Open

Refining the threshold for total_umis #360

brianraymor opened this issue Aug 2, 2019 · 0 comments

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@brianraymor
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brianraymor commented Aug 2, 2019

Per @ambrosejcarr in his review of Add UMI count filter to optimus ETL
It would be appropriate to make a backlog issue to record the existence of open questions:

1. if there is a common user preference for a specific value for the total_umis threshold, and if not,
2. whether users should be enabled to adjust the threshold parameter in the matrix service API.

August 6 - Guidance from AWG

Short-term goal

  • Emptydrops or CellRanger cut-off? (Need to use a new version of emptydrops.)
  • Give the option to get the full matrix but not as a default.
@brianraymor brianraymor added this to the Q3 2019 Milestone 3 milestone Aug 6, 2019
@brianraymor brianraymor removed this from the Q3 2019 Milestone 3 milestone Sep 11, 2019
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