{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":657810085,"defaultBranch":"main","name":"hyena-dna","ownerLogin":"HazyResearch","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2023-06-23T23:02:33.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/2165246?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1691969649.0","currentOid":""},"activityList":{"items":[{"before":"bbf903d2a35b46a2800dee5ea73fe5e47ee43bbc","after":"d553021b483b82980aa4b868b37ec2d4332e198a","ref":"refs/heads/main","pushedAt":"2023-12-04T05:18:56.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"exnx","name":"Eric Nguyen","path":"/exnx","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26887484?s=80&v=4"},"commit":{"message":"Merge pull request #32 from jondeaton/dev\n\nUpdate hg38 data download to use curl instead of gsutil.","shortMessageHtmlLink":"Merge pull request #32 from jondeaton/dev"}},{"before":"cc6ed8de4076734a08ad7b5273512446e18c422f","after":"bbf903d2a35b46a2800dee5ea73fe5e47ee43bbc","ref":"refs/heads/main","pushedAt":"2023-11-25T00:42:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"exnx","name":"Eric Nguyen","path":"/exnx","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26887484?s=80&v=4"},"commit":{"message":"update hg38 w/ new tokenizer usage","shortMessageHtmlLink":"update hg38 w/ new tokenizer usage"}},{"before":"bccd7d1d98423f71edcb68b1f887ca1e282e3745","after":"cc6ed8de4076734a08ad7b5273512446e18c422f","ref":"refs/heads/main","pushedAt":"2023-11-17T17:33:28.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"exnx","name":"Eric Nguyen","path":"/exnx","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26887484?s=80&v=4"},"commit":{"message":"update readme with pointer to the inference code to get logits from pretrained model","shortMessageHtmlLink":"update readme with pointer to the inference code to get logits from p…"}},{"before":"eed1f4b357706bf5f5e5cb057d6ef52ec42acdd9","after":"bccd7d1d98423f71edcb68b1f887ca1e282e3745","ref":"refs/heads/main","pushedAt":"2023-11-15T05:54:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"exnx","name":"Eric Nguyen","path":"/exnx","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26887484?s=80&v=4"},"commit":{"message":"added git-lfs in dockerfile","shortMessageHtmlLink":"added git-lfs in dockerfile"}},{"before":"8f8997d7279e73644f43cfd55a14e6fe4772cd80","after":"eed1f4b357706bf5f5e5cb057d6ef52ec42acdd9","ref":"refs/heads/main","pushedAt":"2023-10-31T23:55:55.000Z","pushType":"push","commitsCount":9,"pusher":{"login":"exnx","name":"Eric Nguyen","path":"/exnx","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26887484?s=80&v=4"},"commit":{"message":"update readme with change log, masked token averaging, and tips for pretraining","shortMessageHtmlLink":"update readme with change log, masked token averaging, and tips for p…"}},{"before":"99fa94c05517bed9a7d23420b42370481c9ec9e6","after":"8f8997d7279e73644f43cfd55a14e6fe4772cd80","ref":"refs/heads/main","pushedAt":"2023-10-18T22:25:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"exnx","name":"Eric Nguyen","path":"/exnx","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26887484?s=80&v=4"},"commit":{"message":"freeze dependency version for transformers==4.26.1 for tokenizer","shortMessageHtmlLink":"freeze dependency version for transformers==4.26.1 for tokenizer"}},{"before":"e366649c1223c77d4acfa73c5f1193de2107a003","after":"99fa94c05517bed9a7d23420b42370481c9ec9e6","ref":"refs/heads/main","pushedAt":"2023-10-17T02:15:38.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"exnx","name":"Eric Nguyen","path":"/exnx","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26887484?s=80&v=4"},"commit":{"message":"new Docker container to reproduce Nucleotide Transf datasets results, and bidirectional HyenaDNA info","shortMessageHtmlLink":"new Docker container to reproduce Nucleotide Transf datasets results,…"}},{"before":"6b3e88e6c0fb3308e73a03e3a53ea7fdc0258ee5","after":"e366649c1223c77d4acfa73c5f1193de2107a003","ref":"refs/heads/main","pushedAt":"2023-10-17T02:12:57.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"exnx","name":"Eric Nguyen","path":"/exnx","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26887484?s=80&v=4"},"commit":{"message":"new Docker container to reproduce Nucleotide Transf datasets results, and bidirectional HyenaDNA info","shortMessageHtmlLink":"new Docker container to reproduce Nucleotide Transf datasets results,…"}},{"before":"db7cc5fb0d063a584692136374b48fb72f077fe8","after":"6b3e88e6c0fb3308e73a03e3a53ea7fdc0258ee5","ref":"refs/heads/main","pushedAt":"2023-10-17T01:15:43.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"exnx","name":"Eric Nguyen","path":"/exnx","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26887484?s=80&v=4"},"commit":{"message":"Merge pull request #10 from cbirchsy/genomic_bench_speedup\n\nSpeed-up Genomic Benchmarks dataloader","shortMessageHtmlLink":"Merge pull request #10 from cbirchsy/genomic_bench_speedup"}},{"before":"4216b46743cc769c457ffc68605135bec52c45fe","after":"db7cc5fb0d063a584692136374b48fb72f077fe8","ref":"refs/heads/main","pushedAt":"2023-09-19T18:00:39.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"exnx","name":"Eric Nguyen","path":"/exnx","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26887484?s=80&v=4"},"commit":{"message":"Merge pull request #13 from awaelchli/bugfix/device\n\nFix moving torchmetrics to cuda device 0","shortMessageHtmlLink":"Merge pull request #13 from awaelchli/bugfix/device"}},{"before":"f6ea78112f2587611c772959b6a72033a5ddd04f","after":"4216b46743cc769c457ffc68605135bec52c45fe","ref":"refs/heads/main","pushedAt":"2023-09-01T19:36:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"exnx","name":"Eric Nguyen","path":"/exnx","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26887484?s=80&v=4"},"commit":{"message":"update Docker image w/ git-lfs dependency","shortMessageHtmlLink":"update Docker image w/ git-lfs dependency"}},{"before":"ded8ddaf4200b45d342751e6676a0b3d3aab552a","after":"f6ea78112f2587611c772959b6a72033a5ddd04f","ref":"refs/heads/main","pushedAt":"2023-08-14T09:17:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"exnx","name":"Eric Nguyen","path":"/exnx","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26887484?s=80&v=4"},"commit":{"message":"update the docker file","shortMessageHtmlLink":"update the docker file"}},{"before":"acf89e66b26c1cc44bd9a00f81387c776f3b2a66","after":null,"ref":"refs/heads/loaders","pushedAt":"2023-08-13T23:34:09.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"exnx","name":"Eric Nguyen","path":"/exnx","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26887484?s=80&v=4"}},{"before":"7016972bf8e155457598b717472ada2f5295a8a1","after":"ded8ddaf4200b45d342751e6676a0b3d3aab552a","ref":"refs/heads/main","pushedAt":"2023-08-13T23:34:06.000Z","pushType":"pr_merge","commitsCount":9,"pusher":{"login":"exnx","name":"Eric Nguyen","path":"/exnx","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26887484?s=80&v=4"},"commit":{"message":"Merge pull request #11 from HazyResearch/loaders\n\nseveral updates","shortMessageHtmlLink":"Merge pull request #11 from HazyResearch/loaders"}},{"before":"a465125344be76bf39ab2526f9178546d90e10a7","after":"acf89e66b26c1cc44bd9a00f81387c776f3b2a66","ref":"refs/heads/loaders","pushedAt":"2023-08-13T23:32:26.000Z","pushType":"push","commitsCount":7,"pusher":{"login":"exnx","name":"Eric Nguyen","path":"/exnx","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26887484?s=80&v=4"},"commit":{"message":"add Dockerfile for dependencies","shortMessageHtmlLink":"add Dockerfile for dependencies"}},{"before":null,"after":"a465125344be76bf39ab2526f9178546d90e10a7","ref":"refs/heads/loaders","pushedAt":"2023-08-11T21:25:24.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"exnx","name":"Eric Nguyen","path":"/exnx","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26887484?s=80&v=4"},"commit":{"message":"add replace N token and add pad token flags in hg38 pretraining","shortMessageHtmlLink":"add replace N token and add pad token flags in hg38 pretraining"}},{"before":"9c0a86d8e206876dfd3fed014a6ef9dd77c896f4","after":"7016972bf8e155457598b717472ada2f5295a8a1","ref":"refs/heads/main","pushedAt":"2023-07-18T19:40:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"exnx","name":"Eric Nguyen","path":"/exnx","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26887484?s=80&v=4"},"commit":{"message":"update flash-attn install cmds","shortMessageHtmlLink":"update flash-attn install cmds"}},{"before":"04c64e5f40f2f14a2b432e2fb2feca7980e82e53","after":"9c0a86d8e206876dfd3fed014a6ef9dd77c896f4","ref":"refs/heads/main","pushedAt":"2023-07-18T16:26:32.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"exnx","name":"Eric Nguyen","path":"/exnx","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26887484?s=80&v=4"},"commit":{"message":"Merge pull request #4 from eltociear/patch-1\n\nFix typo in encoders.py","shortMessageHtmlLink":"Merge pull request #4 from eltociear/patch-1"}},{"before":"b529334fe74fab8a5afa3cb19726f38a2faa5d6a","after":"04c64e5f40f2f14a2b432e2fb2feca7980e82e53","ref":"refs/heads/main","pushedAt":"2023-07-18T16:26:17.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"exnx","name":"Eric Nguyen","path":"/exnx","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26887484?s=80&v=4"},"commit":{"message":"Merge pull request #6 from Miking98/readme\n\nREADME update with species","shortMessageHtmlLink":"Merge pull request #6 from Miking98/readme"}},{"before":"d3f9ee1d8cd6627161f43f350ef95b12fdcde340","after":"b529334fe74fab8a5afa3cb19726f38a2faa5d6a","ref":"refs/heads/main","pushedAt":"2023-07-04T19:33:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"exnx","name":"Eric Nguyen","path":"/exnx","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26887484?s=80&v=4"},"commit":{"message":"put model in eval for huggingface.py demo","shortMessageHtmlLink":"put model in eval for huggingface.py demo"}},{"before":"8342ddd125ea25ce0f9406d76c11ee9ae4c61cf6","after":"d3f9ee1d8cd6627161f43f350ef95b12fdcde340","ref":"refs/heads/main","pushedAt":"2023-07-04T08:47:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"exnx","name":"Eric Nguyen","path":"/exnx","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26887484?s=80&v=4"},"commit":{"message":"add discord link","shortMessageHtmlLink":"add discord link"}},{"before":"e62b7481606b64b5f8b7f191f928326a903a62af","after":"8342ddd125ea25ce0f9406d76c11ee9ae4c61cf6","ref":"refs/heads/main","pushedAt":"2023-07-04T02:58:15.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"exnx","name":"Eric Nguyen","path":"/exnx","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26887484?s=80&v=4"},"commit":{"message":"add note about pretraining on your own custom data","shortMessageHtmlLink":"add note about pretraining on your own custom data"}},{"before":"574412b59143fc139ced1350381cac0539154fc9","after":"e62b7481606b64b5f8b7f191f928326a903a62af","ref":"refs/heads/main","pushedAt":"2023-07-04T02:55:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"exnx","name":"Eric Nguyen","path":"/exnx","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26887484?s=80&v=4"},"commit":{"message":"add note about pretraining on your own custom data","shortMessageHtmlLink":"add note about pretraining on your own custom data"}},{"before":"eb3ed410750e0ea41978e156bdd318a5e1514e42","after":"574412b59143fc139ced1350381cac0539154fc9","ref":"refs/heads/main","pushedAt":"2023-07-02T01:53:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"exnx","name":"Eric Nguyen","path":"/exnx","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26887484?s=80&v=4"},"commit":{"message":"add suggested GPU requirements","shortMessageHtmlLink":"add suggested GPU requirements"}},{"before":"80b682afcd433c65dd570330df242da8742771f6","after":"eb3ed410750e0ea41978e156bdd318a5e1514e42","ref":"refs/heads/main","pushedAt":"2023-07-02T01:46:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"exnx","name":"Eric Nguyen","path":"/exnx","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26887484?s=80&v=4"},"commit":{"message":"clean up, remove unused tasks / functions","shortMessageHtmlLink":"clean up, remove unused tasks / functions"}},{"before":"372625a797eb579e32c500f0ff9fa384fbd4b02f","after":"80b682afcd433c65dd570330df242da8742771f6","ref":"refs/heads/main","pushedAt":"2023-06-29T20:30:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"exnx","name":"Eric Nguyen","path":"/exnx","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26887484?s=80&v=4"},"commit":{"message":"update readme","shortMessageHtmlLink":"update readme"}},{"before":"a0d81c584eabf9dc8b85a7d241d4a939a33b018f","after":"372625a797eb579e32c500f0ff9fa384fbd4b02f","ref":"refs/heads/main","pushedAt":"2023-06-29T08:10:49.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"exnx","name":"Eric Nguyen","path":"/exnx","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26887484?s=80&v=4"},"commit":{"message":"first commit","shortMessageHtmlLink":"first commit"}},{"before":"21b49a5f4c1e7a8c07b9850748368eeb49839789","after":"a0d81c584eabf9dc8b85a7d241d4a939a33b018f","ref":"refs/heads/main","pushedAt":"2023-06-29T08:07:09.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"exnx","name":"Eric Nguyen","path":"/exnx","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26887484?s=80&v=4"},"commit":{"message":"first commit","shortMessageHtmlLink":"first commit"}},{"before":"f43f6de633deab49bc4ea659f9254856e3649ffa","after":"21b49a5f4c1e7a8c07b9850748368eeb49839789","ref":"refs/heads/main","pushedAt":"2023-06-29T08:05:52.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"exnx","name":"Eric Nguyen","path":"/exnx","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26887484?s=80&v=4"},"commit":{"message":"first commit","shortMessageHtmlLink":"first commit"}},{"before":"716f6b942c7d7d8aea3dc0782083a67b68a63948","after":"f43f6de633deab49bc4ea659f9254856e3649ffa","ref":"refs/heads/main","pushedAt":"2023-06-29T08:04:40.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"exnx","name":"Eric Nguyen","path":"/exnx","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26887484?s=80&v=4"},"commit":{"message":"first commit","shortMessageHtmlLink":"first commit"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAADv-YpiwA","startCursor":null,"endCursor":null}},"title":"Activity · HazyResearch/hyena-dna"}