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Check multiple software options to include in piRNA module #15

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JFsanchezherrero opened this issue Oct 26, 2021 · 1 comment

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JFsanchezherrero commented Oct 26, 2021

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JFsanchezherrero commented Oct 26, 2021 •

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Several software must be available too to include in the piRNA analysis.

As an example:

PILFER:

Software: https://github.com/rishavray/PILFER
Paper: https://www.sciencedirect.com/science/article/pii/S0888754317301532

Main problem it might be it is python2.7, we would need to check conda to deal with it appropriately.

WIND:

Software: https://github.com/ConYel/wind
Paper: https://f1000research.com/articles/10-1/v3

piRNN:

Software: https://github.com/bioinfolabmu/piRNN/
Paper: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6078063/

2lpiRNApred:

Sofware: https://github.com/JianyuanLin/2lpiRNApred
Paper: https://pubmed.ncbi.nlm.nih.gov/32138598/

Check for other alternatives here:

JFsanchezherrero added the enhancement label

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