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Install dependencies #6

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JFsanchezherrero opened this issue Mar 6, 2020 · 0 comments

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JFsanchezherrero commented Mar 6, 2020

Create a shell script that installs third party software. Take a look at ARIBA script:
https://github.com/sanger-pathogens/ariba/blob/master/install_dependencies.sh

Include a module in BacterialTyper that checks for dependencies and calls the shell script if necessary.
https://github.com/JFsanchezherrero/BacterialTyper/blob/d3067ea31a216fa9930f086cf887388822bfca9c/BacterialTyper/modules/set_configuration.py#L7

See details of python, perl and software dependencies in:
BacterialTyper/config/main/

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