Add omero-rdf to conda-forge

[marimeireles]

Hey @joshmoore thank you for the project!
I'm currently using it to integrate MPI's evolutionary biology databases.

I'm wondering if you're interested in having the package over at conda-forge.
I'm a contributor there and can easily do it, it really doesn't require any extra work for you other than tagging each new version you release with a commit tag.

So for example, for version 1.0 in pipy, on github you'd have to have:

git tag -a v1.0 -m "Tagging version 1.0"
git push origin v1.0

By keeping the commits tagged, a bot will automatically pick up the new versions from your repository and create a PR on the conda-forge side. And then someone has to check everything is alright and merge (this could me, you or other contributors).

I'll be happy to do the port and maintain the package.

Thanks for your work with OMERO!

[marimeireles]

Oh, sorry about that, I just noticed that the repo is already tagged. So no extra work would be necessary.
Best!

[joshmoore]

I'm wondering if you're interested in having the package over at conda-forge.

Sure! Please feel free to add me as an additional maintainer and thanks!

[marimeireles]

Hey @joshmoore happy to contribute back! : )

Just so you're up to date this might take a little while. I've identified a couple of other missing dependencies that omero-rdf depends on:

  - types-entrypoints
  - omero-marshal
  - wikidataintegrator
      - pyshex
          - cfgraph 
          - pyshexc 
              - pyjsg
              - rdflib-shim
              - shexjsg
                - pyjsg
          - rdflib-shim
          - shexjsg
          - sparqlslurper
            - rdflib-shim
      - mwoauth [error]
      - shexer
        - wlighter

I've created packages for all the missing dependencies and I'll open PRs on conda-forge to have them merged soon. However I had an issue with mwoauth. Might be a little trickier. Once it's done I'll update this issue again.

Best!

[joshmoore]

Wow. Thanks, @marimeireles. FWIW, an option would likely to make some of these optional dependencies if that would make your life substantially easier.

[marimeireles]

Hi @joshmoore thanks for the offer.
However, I believe these types-entrypoints, omero-marshal, wikidataintegrator are pivotal for the functioning of omero-rdf, correct? If they are, then there's hardly anything we can do other than wait for the packages to be integrated.
I'll give another push on this effort today. I think 1 or 2 of the packages were merged by now.
Best,

[joshmoore]

	pivotal for functioning	conda-forge plan
omero-marshal	yes (https://github.com/conda-forge/omero-marshal-feedstock/pull/2/files)	happy to take over maintainership of a feedstock
types-entrypoints	needs a workaround (#33)	Bit surprised it's not
wikidataintegrator	could be (optionally) avoided (#35)	No idea

[joshmoore]

@tstoeter see https://github.com/conda-forge/staged-recipes/pulls/marimeireles for other attempts to add required libraries.

[joshmoore]

Think that's everything done from my side, @marimeireles. Please let me know if there's anything else you need.

[marimeireles]

Cool, thanks Josh. I'm working on it.
Should we re-open this?

We need to remove the following packages from the pyproject rdflib-pyld-compat and wikidataintegrator:

omero-rdf/pyproject.toml

Lines 26 to 28 in 22557cf

	"rdflib-pyld-compat",
	"omero-marshal",
	"wikidataintegrator",

Also, apparently I made a mistake, and we're still missing rdflib-pyld-compat from conda-forge. I'm assuming we need this one? Or is it also possible to remove it?

[joshmoore]

rdflib-pyld-compat we'l need. I forgot to remove wikidataintegrator. Thanks to @tstoeter for #36