Update paths

Author: robbibt

.github/workflows/dea-intertidal-image.yml

@@ -96,16 +96,15 @@ jobs:
             --env AWS_ACCESS_KEY_ID \
             --env AWS_SECRET_ACCESS_KEY \
             --env AWS_SESSION_TOKEN \
-            --volume ${GITHUB_WORKSPACE}:/code \
+            --volume ${GITHUB_WORKSPACE}:/app \
             --volume ${GITHUB_WORKSPACE}/tide_models:/var/share/tide_models \
-            --volume ${GITHUB_WORKSPACE}/artifacts:/mnt/artifacts \
             dea_intertidal pytest -v --cov=intertidal --cov-report=xml tests
 
-          # Copy out validation outputs produced by the integration tests and place them
-          # in correct output locations so they can be committed back into the repository
-          cp ./artifacts/validation.jpg ./tests/validation.jpg
-          cp ./artifacts/validation.csv ./tests/validation.csv
-          cp ./artifacts/README.md ./tests/README.md
+          # # Copy out validation outputs produced by the integration tests and place them
+          # # in correct output locations so they can be committed back into the repository
+          # cp ./artifacts/validation.jpg ./tests/validation.jpg
+          # cp ./artifacts/validation.csv ./tests/validation.csv
+          # cp ./artifacts/README.md ./tests/README.md
 
       # Commit validation results produced by integration tests back into repo
       - name: Commit validation results into repository

tests/test_intertidal.py

@@ -59,9 +59,9 @@ def test_dem_accuracy(
     val_path="tests/data/lidar_10m_tests.tif",
     mod_path="data/processed/ga_s2ls_intertidal_cyear_3/0-0-1/tes/ting/2021--P1Y/ga_s2ls_intertidal_cyear_3_testing_2021--P1Y_final_elevation.tif",
     input_csv="tests/validation.csv",
-    output_csv="artifacts/validation.csv",
-    output_plot="artifacts/validation.jpg",
-    output_md="artifacts/README.md",
+    output_csv="tests/validation.csv",
+    output_plot="tests/validation.jpg",
+    output_md="tests/README.md",
 ):
     """
     Compares elevation outputs of the previous CLI step against
@@ -189,7 +189,7 @@ def test_dem_accuracy(
     ax2.set_ylabel("Metres (m)")
     ax2.set_xlabel(None)
 
-    # Write into mounted artifacts directory
+    # Write output CSV
     accuracy_df.to_csv(output_csv)
     plt.savefig(output_plot, dpi=100, bbox_inches="tight")