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'EpiReport' package

European Centre for Disease Prevention and Control (ECDC)

Description

The EpiReport package allows the user to draft an epidemiological report similar to the ECDC Annual Epidemiological Reports (see https://ecdc.europa.eu/en/annual-epidemiological-reports) in Microsoft Word format for a given disease getAER().

Through standalone functions, the package is specifically designed to generate each disease-specific output presented in these reports.

The package includes:

  • Table with the distribution of cases by Member State over the last five years getTableByMS()
  • Seasonal plot with the distribution of cases at EU/EEA level, by month, over the past five years getSeason()
  • Trend plot with the trend and number of cases at EU/EEA level, by month, over the past five years getTrend()
  • Age and gender bar graph with the distribution of cases at EU/EEA level getAgeGender()

Two types of datasets can be used:

  • The default dataset included in the EpiReport package which includes Denger data for 2015-2019: EpiReport::DENGUE2019;
  • Any dataset specified as described in the package vignette.