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How to get data? #1

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shenao1994 opened this issue Nov 5, 2021 · 4 comments
Open

How to get data? #1

shenao1994 opened this issue Nov 5, 2021 · 4 comments

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@shenao1994
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Hello, I'm a novice in genomics. I'm reproducing some of the results in your paper, but when I run your code, the compiler prompts for missing data. Can you tell me how to solve it? Thank you!
data_set/eukarya_proteomes_metadata.tsv

@ESDeutekom
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Dear Ao Shen,

Thank you for your message. Could you tell me what exactly you are trying to run (code files), and where in the code (line) it is giving you the error?

kind regards,
Eva

@shenao1994
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Thank you for your reply! I want to run build_ eukarya_ Db.py this file, but an error will be reported:FileNotFoundError: [Errno 2] No such file or directory: 'E:/workplace/orthology analysis/local data/data_set/eukarya_proteomes_metadata.tsv'. I didn't find this part of data in the project, or did I run the files in the wrong order.

@ESDeutekom
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Dear Ao Shen,

Thank you for the additional information. I see. For this part of the pipeline, I need to provide you with a lot of additional data that unfortunately cannot be shared via github. Can I contact you via the email address that is on your GitHub page so that we can discuss this matter further? Also, I can more easily share this data with you then.
Thank you for pointing this out also, I now found some hardcoded paths in the code there. I will adjust this. I hope in the future to provide this additional data via another website.

Kind regards,
Eva

@shenao1994
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Author

Dear Ao Shen,

Thank you for the additional information. I see. For this part of the pipeline, I need to provide you with a lot of additional data that unfortunately cannot be shared via github. Can I contact you via the email address that is on your GitHub page so that we can discuss this matter further? Also, I can more easily share this data with you then. Thank you for pointing this out also, I now found some hardcoded paths in the code there. I will adjust this. I hope in the future to provide this additional data via another website.

Kind regards, Eva

Thank you for your help! If it's convenient, you can contact me by email. My email address is [email protected].

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