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pom.xml
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<?xml version="1.0" encoding="UTF-8"?>
<!--
* Update ERDDAP version number below in ...
<version>2.24-SNAPSHOT</version>
* Update the version numbers starting with <plugins> section.
Website to search for maven plugins and dependencies: https://mvnrepository.com/
* Compile in Maven and gather dependency .jar files
(pom.xml based on Kyle's pom from https://github.com/axiom-data-science/erddap )
From DOS command line (or Bash) (after synchToMaven.sh has copied source files to Maven dir):
//mvn -help
//add -e for full error messages
//add -X for debug messages
cd \programs\mavenERDDAP\ERDDAP
set "JAVA_HOME=C:\programs\jdk-17.0.3+7"
mvn clean //removes previously generated .class files and ...
mvn compile //uses javac. Identifies missing dependencies/.jars.
mvn dependency:analyze //Identifies excess or missing dependencies/.jars.
// Expected:
// WARNINGS for postgresql.jar and Cassandra dependencies:
// slf4j, guava, lz4, metrics, netty, snappy, aws-crt.
mvn package //Creates a war in \programs\mavenERDDAP\ERDDAP\target
or: mvn clean install -U //clears out cached information (more thoroughly than 'clean') and does it all?
* Run TestAll.
-->
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>gov.noaa.pfel.erddap</groupId>
<artifactId>ERDDAP</artifactId>
<version>2.25_1</version>
<packaging>war</packaging>
<name>erddap</name>
<url>https://coastwatch.pfeg.noaa.gov/erddap/index.html</url>
<properties>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<erddapcontent.download.version>content1.0.0</erddapcontent.download.version>
<erddapreffiles.download.version>1.0.0</erddapreffiles.download.version>
<netcdfJavaVersion>5.7.0</netcdfJavaVersion>
<test.resources.version>test1.04</test.resources.version>
<jettyVersion>12.0.15</jettyVersion>
<error-prone.version>2.27.0</error-prone.version>
<download.unpackWhenChanged>true</download.unpackWhenChanged>
</properties>
<repositories>
<!-- Use this if you switch away from netcdfAll.jar to modules - or just to get Zarr module.
Published advice: https://docs.unidata.ucar.edu/netcdf-java/current/userguide/using_netcdf_java_artifacts.html
Repository https://artifacts.unidata.ucar.edu/repository/unidata-all/ (on web page)
or https://artifacts.unidata.ucar.edu/repository/unidata-releases/ (privately)
Browse either https://artifacts.unidata.ucar.edu/#browse/browse
-->
<repository>
<id>unidata-all</id>
<name>UNIDATA All</name>
<url>https://artifacts.unidata.ucar.edu/repository/unidata-all/</url>
</repository>
</repositories>
<build>
<sourceDirectory>WEB-INF/classes</sourceDirectory>
<resources>
<resource>
<directory>src/main/resources</directory>
</resource>
</resources>
<plugins>
<plugin>
<artifactId>maven-dependency-plugin</artifactId>
<executions>
<execution>
<?m2e execute onConfiguration?>
<phase>validate</phase>
<goals>
<goal>copy-dependencies</goal>
</goals>
<configuration>
<outputDirectory>WEB-INF/lib</outputDirectory>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<artifactId>maven-clean-plugin</artifactId>
<version>3.4.0</version>
<configuration>
<filesets>
<fileset>
<directory>WEB-INF/lib</directory>
<followSymlinks>false</followSymlinks>
</fileset>
</filesets>
</configuration>
</plugin>
<plugin>
<!-- https://mvnrepository.com/artifact/org.apache.maven.plugins/maven-compiler-plugin -->
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.13.0</version>
<configuration>
<failOnError>true</failOnError>
<source>21</source> <!-- java version -->
<target>21</target>
<encoding>UTF-8</encoding>
<compilerArgs>
<arg>-XDcompilePolicy=simple</arg>
<arg>-Xplugin:ErrorProne -Xep:StringCaseLocaleUsage:OFF -Xep:EmptyCatch:OFF -Xep:StringSplitter:OFF -Xep:JavaLangClash:OFF -Xep:CatchAndPrintStackTrace:OFF -Xep:NotJavadoc:OFF -Xep:InvalidBlockTag:OFF -Xep:MissingSummary:OFF -Xep:EmptyBlockTag:OFF -Xep:InvalidParam:OFF -Xep:InvalidThrows:OFF -Xep:ReturnFromVoid:OFF</arg>
</compilerArgs>
<excludes>
<exclude>gov/noaa/pfel/coastwatch/sgt/LandMask.javaINACTIVE</exclude>
<exclude>gov/noaa/pfel/coastwatch/sgt/MapGraph.javaINACTIVE</exclude>
<exclude>gov/noaa/pfel/coastwatch/sgt/MapProj.javaINACTIVE</exclude>
<exclude>gov/noaa/pfel/coastwatch/sgt/GSHHSNewOnHold.java_NOT_YET</exclude>
<exclude>gov/noaa/pfel/coastwatch/griddata/Grd.javaINACTIVE</exclude>
<exclude>gov/noaa/pfel/coastwatch/griddata/GridDataSetCWOpendap.javaINACTIVE</exclude>
<exclude>gov/noaa/pfel/coastwatch/griddata/GridDataSetPathfinder.javaINACTIVE</exclude>
<exclude>gov/noaa/pfel/coastwatch/griddata/WriteShapefile.javaINACTIVE</exclude>
<exclude>gov/noaa/pfel/coastwatch/pointdata/DigirIobisTDSP.javaINACTIVE</exclude>
<exclude>gov/noaa/pfel/coastwatch/pointdata/DigirObisTDSP.javaINACTIVE</exclude>
<exclude>gov/noaa/pfel/coastwatch/hdf/HdfWriter.javaINACTIVE</exclude>
<exclude>gov/noaa/pfel/coastwatch/HelloWorld.javaINACTIVE</exclude>
<exclude>gov/noaa/pfel/erddap/dataset/EDDTableFromBinaryFile.javaINACTIVE</exclude>
<exclude>gov/noaa/pfel/erddap/dataset/EDDTableFromMatFiles.javaINACTIVE</exclude>
<exclude>gov/noaa/pfel/erddap/dataset/EDDTableCopyPost.javaINACTIVE</exclude>
<exclude>gov/noaa/pfel/erddap/dataset/EDDTableFromBMDE.javaINACTIVE</exclude>
<exclude>gov/noaa/pfel/erddap/dataset/EDDTableFromMWFS.javaINACTIVE</exclude>
<exclude>gov/noaa/pfel/erddap/dataset/EDDTableFromNOS.javaINACTIVE</exclude>
<exclude>gov/noaa/pfel/erddap/dataset/EDDTableFromNcSequenceFiles.javaNOT_FINISHED</exclude>
<exclude>gov/noaa/pfel/erddap/dataset/EDDTableFromNWISDV.javaINACTIVE</exclude>
<exclude>gov/noaa/pfel/erddap/dataset/EDDTableFromPostDatabase.javaINACTIVE</exclude>
<exclude>gov/noaa/pfel/erddap/dataset/EDDTableFromPostNcFiles.javaINACTIVE</exclude>
<exclude>gov/noaa/pfel/coastwatch/util/FileVisitorDNLS.javaOLD</exclude>
</excludes>
<annotationProcessorPaths>
<path>
<groupId>com.google.errorprone</groupId>
<artifactId>error_prone_core</artifactId>
<version>${error-prone.version}</version>
</path>
<!-- Other annotation processors go here.
If 'annotationProcessorPaths' is set, processors will no longer be
discovered on the regular -classpath; see also 'Using Error Prone
together with other annotation processors' below. -->
</annotationProcessorPaths>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-enforcer-plugin</artifactId>
<version>3.5.0</version>
<executions>
<execution>
<id>enforce-maven</id>
<goals>
<goal>enforce</goal>
</goals>
<configuration>
<rules>
<requireMavenVersion>
<version>3.6.3</version>
</requireMavenVersion>
</rules>
</configuration>
</execution>
<execution>
<id>no-test-data-in-src-test-resources</id>
<goals>
<goal>enforce</goal>
</goals>
<configuration>
<rules>
<requireFilesDontExist>
<message>Test data directories should be removed from src/test/resources</message>
<files>
<file>${project.basedir}/src/test/resources/data</file>
<file>${project.basedir}/src/test/resources/largeFiles</file>
<file>${project.basedir}/src/test/resources/largePoints</file>
<file>${project.basedir}/src/test/resources/largeSatellite</file>
</files>
</requireFilesDontExist>
</rules>
</configuration>
</execution>
</executions>
</plugin>
<!-- https://mvnrepository.com/artifact/org.apache.maven.plugins/maven-war-plugin -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-war-plugin</artifactId>
<version>3.4.0</version>
<configuration>
<attachClasses>true</attachClasses>
<warSourceDirectory>${project.basedir}</warSourceDirectory>
<warSourceExcludes>**/*.java, **/*.javaINACTIVE, **/*.javaInactive, **/*.java_NOT_YET, **/*.javaNOT_FINISHED, **/*.javaOLD, content/**, data/**, development/**, test-data/**, /src/test/**, target/**, src/**, WEB-INF/classes/gov/noaa/pfel/coastwatch/log.*, WEB-INF/lib/**, WEB-INF/NetCheck.*, WEB-INF/*.web.xml, WEB-INF/DoubleCenterGrids.sh, WEB-INF/FileVisitorDNLS.sh, WEB-INF/FindDuplicateTime.*, WEB-INF/GenerateO*, WEB-INF/GenerateT*, WEB-INF/GridSaveAs*, WEB-INF/incompleteMainCatalog.xml, WEB-INF/iobis.m, WEB-INF/obis.m, WEB-INF/MapViewer.*, WEB-INF/QN2005193*, WEB-INF/ValidateDataSetProperties*, WEB-INF/fonts/**, WEB-INF/temp/**, WEB-INF/ref/*.zip, *.*, translation/**, .mvn/**, .settings/**, .github/**, .vscode/**</warSourceExcludes>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-source-plugin</artifactId>
<version>3.3.1</version>
<executions>
<execution>
<id>attach-sources</id>
<phase>verify</phase>
<goals>
<goal>jar-no-fork</goal>
</goals>
</execution>
</executions>
</plugin>
<!-- https://mvnrepository.com/artifact/org.eclipse.jetty/jetty-maven-plugin -->
<plugin>
<groupId>org.eclipse.jetty.ee10</groupId>
<artifactId>jetty-ee10-maven-plugin</artifactId>
<version>${jettyVersion}</version>
<configuration>
<webApp>
<contextPath>/erddap</contextPath>
<descriptor>${project.basedir}/WEB-INF/web.xml</descriptor>
</webApp>
<!-- necessary to override the default classesDirectory ${project.basedir}/target/classes due to:
https://github.com/ERDDAP/erddap/blob/33e6e531484b0cc6ed461f0640b1f0ad3b83e45b/WEB-INF/classes/com/cohort/util/File2.java#L216-->
<classesDirectory>${project.build.directory}/${project.build.finalName}/WEB-INF/classes</classesDirectory>
<scan>0</scan>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-antrun-plugin</artifactId>
<version>3.1.0</version>
<executions>
<!-- create data directory for testing -->
<execution>
<?m2e execute onConfiguration?>
<id>make-data-dir</id>
<phase>initialize</phase>
<goals>
<goal>run</goal>
</goals>
<configuration>
<target>
<mkdir dir="${project.basedir}/target/data"/>
</target>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<groupId>com.googlecode.maven-download-plugin</groupId>
<artifactId>download-maven-plugin</artifactId>
<version>1.11.5</version>
<executions>
<execution>
<id>download-content</id>
<phase>initialize</phase>
<goals>
<goal>wget</goal>
</goals>
<configuration>
<url>https://github.com/ERDDAP/erddapContent/releases/download/${erddapcontent.download.version}/erddapContent.zip</url>
<unpackWhenChanged>${download.unpackWhenChanged}</unpackWhenChanged>
<outputDirectory>${project.basedir}</outputDirectory>
<skip>${skipResourceDownload}</skip>
</configuration>
</execution>
<execution>
<id>download-etopo</id>
<phase>initialize</phase>
<goals>
<goal>wget</goal>
</goals>
<configuration>
<url>https://github.com/ERDDAP/ERDDAPRefFiles/releases/download/${erddapreffiles.download.version}/etopo1_ice_g_i2.zip</url>
<unpackWhenChanged>${download.unpackWhenChanged}</unpackWhenChanged>
<outputDirectory>${project.basedir}/WEB-INF/ref/</outputDirectory>
<skip>${skipResourceDownload}</skip>
</configuration>
</execution>
<execution>
<id>download-ref</id>
<phase>initialize</phase>
<goals>
<goal>wget</goal>
</goals>
<configuration>
<url>https://github.com/ERDDAP/ERDDAPRefFiles/releases/download/${erddapreffiles.download.version}/ref_files.zip</url>
<unpackWhenChanged>${download.unpackWhenChanged}</unpackWhenChanged>
<outputDirectory>${project.basedir}/WEB-INF/ref/</outputDirectory>
<skip>${skipResourceDownload}</skip>
</configuration>
</execution>
<execution>
<id>download-test-resources-data</id>
<phase>generate-test-resources</phase>
<goals>
<goal>wget</goal>
</goals>
<configuration>
<url>https://github.com/ERDDAP/erddapTest/releases/download/${test.resources.version}/data.zip</url>
<unpackWhenChanged>${download.unpackWhenChanged}</unpackWhenChanged>
<outputDirectory>${project.basedir}/test-data</outputDirectory>
<skip>${skipTestResourceDownload}</skip>
</configuration>
</execution>
<execution>
<id>download-test-resources-largeFiles</id>
<phase>generate-test-resources</phase>
<goals>
<goal>wget</goal>
</goals>
<configuration>
<url>https://github.com/ERDDAP/erddapTest/releases/download/${test.resources.version}/largeFiles.zip</url>
<unpackWhenChanged>${download.unpackWhenChanged}</unpackWhenChanged>
<outputDirectory>${project.basedir}/test-data</outputDirectory>
<skip>${skipTestResourceDownload}</skip>
</configuration>
</execution>
<execution>
<id>download-test-resources-largePoints</id>
<phase>generate-test-resources</phase>
<goals>
<goal>wget</goal>
</goals>
<configuration>
<url>https://github.com/ERDDAP/erddapTest/releases/download/${test.resources.version}/largePoints.zip</url>
<unpackWhenChanged>${download.unpackWhenChanged}</unpackWhenChanged>
<outputDirectory>${project.basedir}/test-data</outputDirectory>
<skip>${skipTestResourceDownload}</skip>
</configuration>
</execution>
<execution>
<id>download-test-resources-largeSatellite</id>
<phase>generate-test-resources</phase>
<goals>
<goal>wget</goal>
</goals>
<configuration>
<url>https://github.com/ERDDAP/erddapTest/releases/download/${test.resources.version}/largeSatellite.zip</url>
<unpackWhenChanged>${download.unpackWhenChanged}</unpackWhenChanged>
<outputDirectory>${project.basedir}/test-data</outputDirectory>
<skip>${skipTestResourceDownload}</skip>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<artifactId>maven-surefire-plugin</artifactId>
<version>3.5.2</version>
<configuration>
<argLine>${surefire.jacoco.args}</argLine>
<additionalClasspathElements>
<additionalClasspathElement>${project.basedir}/test-data</additionalClasspathElement>
</additionalClasspathElements>
<excludedGroups>Jetty, Slow, LargeFiles, Flaky, AWS, LocalERDDAP, Password, Thredds, ExternalERDDAP, MissingFile, ExternalOther, IncompleteTest, RequiresContent, MissingDataset</excludedGroups>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-failsafe-plugin</artifactId>
<version>3.5.2</version>
<executions>
<execution>
<goals>
<goal>integration-test</goal>
<goal>verify</goal>
</goals>
<configuration>
<argLine>${failsafe.jacoco.args}</argLine>
<additionalClasspathElements>
<additionalClasspathElement>${project.basedir}/test-data</additionalClasspathElement>
</additionalClasspathElements>
<groups>Jetty, Slow</groups>
<excludedGroups>LargeFiles, Flaky, AWS, LocalERDDAP, Password, Thredds, ExternalERDDAP, MissingFile, ExternalOther, IncompleteTest, RequiresContent, MissingDataset</excludedGroups>
<includes>
<include>**/IT*.java</include>
<include>**/*IT.java</include>
<include>**/*ITCase.java</include>
<include>**/*Test*.java</include>
</includes>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<groupId>com.github.spotbugs</groupId>
<artifactId>spotbugs-maven-plugin</artifactId>
<version>4.8.6.6</version>
<configuration>
<effort>max</effort>
<includeFilterFile>spotbugs-security-include.xml</includeFilterFile>
</configuration>
</plugin>
<!-- <plugin>
<groupId>com.github.spotbugs</groupId>
<artifactId>spotbugs-maven-plugin</artifactId>
<version>4.8.6.5</version>
<configuration>
<maxHeap>2048</maxHeap>
<includeFilterFile>spotbugs-security-include.xml</includeFilterFile> -->
<!-- <excludeFilterFile>spotbugs-security-exclude.xml</excludeFilterFile> -->
<!-- <plugins> -->
<!-- <plugin>
<groupId>com.h3xstream.findsecbugs</groupId>
<artifactId>findsecbugs-plugin</artifactId>
<version>1.13.0</version>
</plugin> -->
<!-- <plugin>
<groupId>com.mebigfatguy.fb-contrib</groupId>
<artifactId>fb-contrib</artifactId>
<version>7.6.8</version>
</plugin> -->
<!-- </plugins>
</configuration>
</plugin> -->
<plugin>
<groupId>org.jacoco</groupId>
<artifactId>jacoco-maven-plugin</artifactId>
<version>0.8.12</version>
<executions>
<execution>
<id>before-unit-test-execution</id>
<goals>
<goal>prepare-agent</goal>
</goals>
<configuration>
<destFile>${project.build.directory}/jacoco-output/jacoco-unit-tests.exec</destFile>
<propertyName>surefire.jacoco.args</propertyName>
</configuration>
</execution>
<execution>
<id>after-unit-test-execution</id>
<phase>test</phase>
<goals>
<goal>report</goal>
</goals>
<configuration>
<dataFile>${project.build.directory}/jacoco-output/jacoco-unit-tests.exec</dataFile>
<outputDirectory>${project.reporting.outputDirectory}/jacoco-unit-test-coverage-report</outputDirectory>
</configuration>
</execution>
<execution>
<id>before-integration-test-execution</id>
<phase>pre-integration-test</phase>
<goals>
<goal>prepare-agent</goal>
</goals>
<configuration>
<destFile>${project.build.directory}/jacoco-output/jacoco-integration-tests.exec</destFile>
<propertyName>failsafe.jacoco.args</propertyName>
</configuration>
</execution>
<execution>
<id>after-integration-test-execution</id>
<phase>post-integration-test</phase>
<goals>
<goal>report</goal>
</goals>
<configuration>
<dataFile>${project.build.directory}/jacoco-output/jacoco-integration-tests.exec</dataFile>
<outputDirectory>${project.reporting.outputDirectory}/jacoco-integration-test-coverage-report</outputDirectory>
</configuration>
</execution>
<execution>
<id>merge-unit-and-integration</id>
<phase>post-integration-test</phase>
<goals>
<goal>merge</goal>
</goals>
<configuration>
<fileSets>
<fileSet>
<directory>${project.build.directory}/jacoco-output/</directory>
<includes>
<include>*.exec</include>
</includes>
</fileSet>
</fileSets>
<destFile>${project.build.directory}/jacoco-output/merged.exec</destFile>
</configuration>
</execution>
<execution>
<id>create-merged-report</id>
<phase>post-integration-test</phase>
<goals>
<goal>report</goal>
</goals>
<configuration>
<dataFile>${project.build.directory}/jacoco-output/merged.exec</dataFile>
<outputDirectory>${project.reporting.outputDirectory}/jacoco-merged-test-coverage-report</outputDirectory>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<groupId>com.cosium.code</groupId>
<artifactId>git-code-format-maven-plugin</artifactId>
<version>5.3</version>
<executions>
<!-- On commit, format the modified files -->
<execution>
<?m2e execute onConfiguration?>
<id>install-formatter-hook</id>
<goals>
<goal>install-hooks</goal>
</goals>
</execution>
<!-- On Maven verify phase, fail if any file
(including unmodified) is badly formatted -->
<execution>
<id>validate-code-format</id>
<goals>
<goal>validate-code-format</goal>
</goals>
</execution>
</executions>
<dependencies>
<!-- Enable https://github.com/google/google-java-format -->
<dependency>
<groupId>com.cosium.code</groupId>
<artifactId>google-java-format</artifactId>
<version>5.3</version>
</dependency>
</dependencies>
<configuration>
<formatterOptions>
<!-- Use AOSP style instead of Google Style (4-space indentation). -->
<googleJavaFormat.aosp>false</googleJavaFormat.aosp>
<!-- Format the javadoc -->
<googleJavaFormat.formatJavadoc>true</googleJavaFormat.formatJavadoc>
<!-- Fix import order and remove any unused imports, but do no other formatting. -->
<googleJavaFormat.fixImportsOnly>false</googleJavaFormat.fixImportsOnly>
<!-- Do not fix the import order. Unused imports will still be removed. -->
<googleJavaFormat.skipSortingImports>false</googleJavaFormat.skipSortingImports>
<!-- Do not remove unused imports. Imports will still be sorted. -->
<googleJavaFormat.skipRemovingUnusedImports>false</googleJavaFormat.skipRemovingUnusedImports>
</formatterOptions>
</configuration>
</plugin>
<plugin>
<groupId>org.jetbrains.dokka</groupId>
<artifactId>dokka-maven-plugin</artifactId>
<version>2.0.0</version>
<executions>
<execution>
<phase>pre-site</phase>
<goals>
<goal>dokka</goal>
</goals>
</execution>
</executions>
<configuration>
<outputDir>${project.basedir}/dokka/documentation/</outputDir>
<sourceDirectories>
<dir>${project.basedir}/WEB-INF/classes/com/cohort/util/</dir>
</sourceDirectories>
<suppressedFiles>
<file>${project.basedir}/WEB-INF/classes/com/cohort/util/Calendar2.java</file>
<file>${project.basedir}/WEB-INF/classes/com/cohort/util/DoubleObject.java</file>
<file>${project.basedir}/WEB-INF/classes/com/cohort/util/File2.java</file>
<file>${project.basedir}/WEB-INF/classes/com/cohort/util/HashDigest.java</file>
<file>${project.basedir}/WEB-INF/classes/com/cohort/util/Image2.java</file>
<file>${project.basedir}/WEB-INF/classes/com/cohort/util/LRUCache.java</file>
<file>${project.basedir}/WEB-INF/classes/com/cohort/util/LICENSE.txt</file>
<file>${project.basedir}/WEB-INF/classes/com/cohort/util/MaskingThread.java</file>
<file>${project.basedir}/WEB-INF/classes/com/cohort/util/Math2.java</file>
<file>${project.basedir}/WEB-INF/classes/com/cohort/util/MustBe.java</file>
<file>${project.basedir}/WEB-INF/classes/com/cohort/util/ResourceBundle2.java</file>
<file>${project.basedir}/WEB-INF/classes/com/cohort/util/Script2.java</file>
<file>${project.basedir}/WEB-INF/classes/com/cohort/util/SimpleException.java</file>
<file>${project.basedir}/WEB-INF/classes/com/cohort/util/String2.java</file>
<file>${project.basedir}/WEB-INF/classes/com/cohort/util/String2Log.java</file>
<file>${project.basedir}/WEB-INF/classes/com/cohort/util/String2LogFactory.java</file>
<file>${project.basedir}/WEB-INF/classes/com/cohort/util/String2LogOutputStream.java</file>
<file>${project.basedir}/WEB-INF/classes/com/cohort/util/StringHolder.java</file>
<file>${project.basedir}/WEB-INF/classes/com/cohort/util/StringHolderComparator.java</file>
<file>${project.basedir}/WEB-INF/classes/com/cohort/util/StringHolderComparatorIgnoreCase.java</file>
<file>${project.basedir}/WEB-INF/classes/com/cohort/util/Test.java</file>
<file>${project.basedir}/WEB-INF/classes/com/cohort/util/Units2.java</file>
<file>${project.basedir}/WEB-INF/classes/com/cohort/util/XML.java</file>
</suppressedFiles>
<jdkVersion>17</jdkVersion>
<noStdlibLink>true</noStdlibLink> <!-- This is the Kotlin stdlib -->
<dokkaPlugins>
<plugin>
<groupId>org.jetbrains.dokka</groupId>
<artifactId>gfm-plugin</artifactId>
<version>2.0.0</version>
</plugin>
</dokkaPlugins>
</configuration>
</plugin>
</plugins>
<pluginManagement>
<plugins>
<!-- https://mvnrepository.com/artifact/org.apache.maven.plugins/maven-resources-plugin -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-resources-plugin</artifactId>
<version>3.3.1</version>
</plugin>
<!-- https://mvnrepository.com/artifact/org.apache.maven.plugins/maven-dependency-plugin -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-dependency-plugin</artifactId>
<version>3.8.1</version>
</plugin>
<!-- https://mvnrepository.com/artifact/org.codehaus.plexus/plexus-utils -->
<plugin>
<groupId>org.codehaus.plexus</groupId>
<artifactId>plexus-utils</artifactId>
<version>4.0.2</version>
</plugin>
<plugin>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.13.0</version>
</plugin>
</plugins>
</pluginManagement>
</build>
<dependencyManagement>
<dependencies>
<!-- https://mvnrepository.com/artifact/software.amazon.awssdk/bom
Parent for reading/writing to AWS S3. -->
<dependency>
<groupId>software.amazon.awssdk</groupId>
<artifactId>bom</artifactId>
<version>2.29.16</version> <!-- and same number several places below -->
<type>pom</type>
<scope>import</scope>
</dependency>
<dependency>
<groupId>org.junit</groupId>
<artifactId>junit-bom</artifactId>
<version>5.11.3</version>
<type>pom</type>
<scope>import</scope>
</dependency>
<!-- This is needed due to indirect dependency in cdm-core -->
<!-- https://mvnrepository.com/artifact/com.google.protobuf/protobuf-java -->
<dependency>
<groupId>com.google.protobuf</groupId>
<artifactId>protobuf-java</artifactId>
<version>3.25.5</version>
</dependency>
<!--
The below are here to force updated dependencies of the hadoop libraries.
The default selections have security vulnerabilities. Ideally we wouldn't be including
hadoop at all, but parquet currently has dependencies on hadoop to read and write files.
-->
<!-- https://mvnrepository.com/artifact/org.apache.avro/avro -->
<dependency>
<groupId>org.apache.avro</groupId>
<artifactId>avro</artifactId>
<version>1.12.0</version>
</dependency>
<!-- https://mvnrepository.com/artifact/dnsjava/dnsjava -->
<dependency>
<groupId>dnsjava</groupId>
<artifactId>dnsjava</artifactId>
<version>3.6.2</version>
</dependency>
<!-- https://mvnrepository.com/artifact/org.bouncycastle/bcprov-jdk18on -->
<dependency>
<groupId>org.bouncycastle</groupId>
<artifactId>bcprov-jdk18on</artifactId>
<version>1.79</version>
</dependency>
<!-- https://mvnrepository.com/artifact/org.apache.commons/commons-configuration2 -->
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-configuration2</artifactId>
<version>2.11.0</version>
</dependency>
<!-- https://mvnrepository.com/artifact/com.nimbusds/nimbus-jose-jwt -->
<dependency>
<groupId>com.nimbusds</groupId>
<artifactId>nimbus-jose-jwt</artifactId>
<version>9.47</version>
</dependency>
</dependencies>
</dependencyManagement>
<dependencies>
<!-- https://mvnrepository.com/artifact/jakarta.servlet/jakarta.servlet-api -->
<dependency>
<groupId>jakarta.servlet</groupId>
<artifactId>jakarta.servlet-api</artifactId>
<version>6.1.0</version>
<scope>provided</scope>
<!-- Tomcat8 needed this. Tomcat10 doesn't allow it.
<configuration>
<port>8081</port>
<path>/erddap</path>
</configuration -->
</dependency>
<dependency>
<groupId>org.junit.jupiter</groupId>
<artifactId>junit-jupiter</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-server</artifactId>
<version>${jettyVersion}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.eclipse.jetty.ee10</groupId>
<artifactId>jetty-ee10-servlet</artifactId>
<version>${jettyVersion}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.eclipse.jetty.ee10</groupId>
<artifactId>jetty-ee10-webapp</artifactId>
<version>${jettyVersion}</version>
<scope>test</scope>
</dependency>
<!-- Kyle had this:
https://mvnrepository.com/artifact/org.apache.ant/ant
<dependency>
<groupId>org.apache.ant</groupId>
<artifactId>ant</artifactId>
<version>1.10.9</version>
</dependency> -->
<!-- https://mvnrepository.com/artifact/com.github.librepdf/openpdf -->
<dependency>
<groupId>com.github.librepdf</groupId>
<artifactId>openpdf</artifactId>
<version>2.0.3</version>
</dependency>
<!-- Kyle had this:
<dependency>
<groupId>wsdl4j</groupId>
<artifactId>wsdl4j</artifactId>
<version>1.6.3</version>
</dependency-->
<!-- https://mvnrepository.com/artifact/org.apache.lucene/lucene-core
The Lucene search option uses this.
2021-12-16 WARNING: Lucene 9.0.0 is available but requires Java 11(?). -->
<dependency>
<groupId>org.apache.lucene</groupId>
<artifactId>lucene-core</artifactId>
<version>10.0.0</version>
</dependency>
<!-- https://mvnrepository.com/artifact/org.apache.lucene/lucene-queryparser
The Lucene search option uses this. -->
<dependency>
<groupId>org.apache.lucene</groupId>
<artifactId>lucene-queryparser</artifactId>
<version>10.0.0</version>
</dependency>
<!-- https://mvnrepository.com/artifact/org.json/json
This is the JSON reader. -->
<dependency>
<groupId>org.json</groupId>
<artifactId>json</artifactId>
<version>20240303</version>
</dependency>
<!-- I have private copy of source code in with my code.
2020-12-21 I tried to remove my copy and use this, but failed.
https://mvnrepository.com/artifact/org.jdom/jdom
<dependency>
<groupId>org.jdom</groupId>
<artifactId>jdom</artifactId>
<version>2.0.2</version>
</dependency-->
<!-- Kyle had this:
<dependency>
<groupId>org.apache.axis</groupId>
<artifactId>axis</artifactId>
<version>1.4</version>
</dependency-->
<!-- Kyle had this:
<dependency>
<groupId>atg.taglib.json</groupId>
<artifactId>json-taglib</artifactId>
<version>0.4.1</version>
</dependency-->
<!-- https://mvnrepository.com/artifact/com.sun.mail/jakarta.mail
Used to send emails. -->
<dependency>
<groupId>com.sun.mail</groupId>
<artifactId>jakarta.mail</artifactId>
<version>2.0.1</version>
</dependency>
<!-- versions: https://mvnrepository.com/artifact/commons-codec/commons-codec
dependency:analyze says it's needed if using netcdf modules
but it's in netcdfAll.jar - ->
<dependency>
<groupId>commons-codec</groupId>
<artifactId>commons-codec</artifactId>
<version>1.15</version>
</dependency> -->
<!-- https://mvnrepository.com/artifact/org.apache.commons/commons-compress
File2 and EDDTableFromNcFiles use this. -->
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-compress</artifactId>
<version>1.27.1</version>
</dependency>
<!-- https://mvnrepository.com/artifact/commons-logging/commons-logging
dependency:analyze says it's needed if using netcdf modules
but it's in netcdfAll.jar
Maven says 1.2's dependencies have 4 vulnerabilities, but all are old log4j vulnerabilities,
so ERDDAP admins shouldn't use old log4j (or any log4j). - ->
<dependency>
<groupId>commons-logging</groupId>
<artifactId>commons-logging</artifactId>
<version>1.2</version>
</dependency> -->
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-jdk14</artifactId>
<version>2.1.0-alpha1</version>
<scope>runtime</scope>
</dependency>
<dependency>
<groupId>edu.ucar</groupId>
<artifactId>cdm-core</artifactId>
<version>${netcdfJavaVersion}</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>edu.ucar</groupId>
<artifactId>cdm-misc</artifactId>
<version>${netcdfJavaVersion}</version>
</dependency>
<dependency>
<groupId>edu.ucar</groupId>
<artifactId>udunits</artifactId>
<version>${netcdfJavaVersion}</version>
</dependency>
<!-- The following are from netcdf and add support for various file types. -->
<dependency>
<groupId>edu.ucar</groupId>
<artifactId>netcdf4</artifactId>
<version>${netcdfJavaVersion}</version>
<scope>runtime</scope>
</dependency>
<dependency>
<groupId>edu.ucar</groupId>
<artifactId>grib</artifactId>
<version>${netcdfJavaVersion}</version>
<scope>runtime</scope>
</dependency>
<dependency>
<groupId>edu.ucar</groupId>
<artifactId>bufr</artifactId>
<version>${netcdfJavaVersion}</version>
<scope>runtime</scope>
</dependency>
<dependency>
<groupId>edu.ucar</groupId>
<artifactId>opendap</artifactId>
<version>${netcdfJavaVersion}</version>
<scope>runtime</scope>
</dependency>
<dependency>
<groupId>edu.ucar</groupId>
<artifactId>cdm-radial</artifactId>
<version>${netcdfJavaVersion}</version>
<scope>runtime</scope>
</dependency>
<dependency>
<groupId>edu.ucar</groupId>
<artifactId>cdm-image</artifactId>
<version>${netcdfJavaVersion}</version>
<scope>runtime</scope>
</dependency>
<dependency>
<groupId>edu.ucar</groupId>
<artifactId>cdm-mcidas</artifactId>
<version>${netcdfJavaVersion}</version>
<scope>runtime</scope>
</dependency>
<dependency>
<groupId>edu.ucar</groupId>
<artifactId>cdm-s3</artifactId>
<version>${netcdfJavaVersion}</version>
<scope>runtime</scope>
</dependency>
<dependency>
<groupId>edu.ucar</groupId>
<artifactId>cdm-zarr</artifactId>
<version>${netcdfJavaVersion}</version>
<scope>runtime</scope>
</dependency>
<!-- https://mvnrepository.com/artifact/org.apache.sis.core/sis-metadata -->
<dependency>
<groupId>org.apache.sis.core</groupId>
<artifactId>sis-metadata</artifactId>
<version>1.4</version>
</dependency>
<!-- https://mvnrepository.com/artifact/org.apache.sis.storage/sis-storage -->
<dependency>
<groupId>org.apache.sis.storage</groupId>
<artifactId>sis-storage</artifactId>
<version>1.4</version>
</dependency>
<dependency>
<groupId>com.sun.xml.bind</groupId>
<artifactId>jaxb-impl</artifactId>
<version>4.0.5</version>
<scope>runtime</scope>
</dependency>
<!-- Version options: https://artifacts.unidata.ucar.edu/#browse/browse:unidata-all:edu%2Fwisc%2Fssec%2Fvisad
Marked as needed by dependency:analyze - ->
<dependency>
<groupId>edu.wisc.ssec</groupId>
<artifactId>visad</artifactId>
<version>2.0-20191209</version>
<scope>runtime</scope>
</dependency>
<!- - https://mvnrepository.com/artifact/org.slf4j/slf4j-simple
It's in netcdf-all.jar
and something else gets slf4j-api-...jar - ->
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-simple</artifactId>
<version>1.7.36</version>
<scope>runtime</scope>
</dependency>
-->
<!-- https://mvnrepository.com/artifact/org.apache.commons/commons-jexl3
This is the expression parser/processor used by EDDTableFromFiles Derived Variables. -->
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-jexl3</artifactId>
<version>3.4.0</version>
</dependency>
<!-- https://mvnrepository.com/artifact/org.postgresql/postgresql
Postgresql users use this. I include for their convenience. -->
<dependency>
<groupId>org.postgresql</groupId>
<artifactId>postgresql</artifactId>
<version>42.7.4</version>
</dependency>
<!-- CASSANDRA
https://mvnrepository.com/artifact/com.datastax.cassandra/cassandra-driver-core
Cassandra uses this.
Be careful. Newer versions may cause trouble with current, older version of Cassandra (which ONC uses). -->