Error in (function (side, at = NULL, labels = TRUE, tick = TRUE, line = NA, : no locations are finite

[DirtyHarry80]

I got this error while executing Main_Doublet_Decon function with a particular Seurat Object. Changing the Seurat Object (another dataset) removed the error. Any clues? This is how I proceeded from the Seurat object:

new.file=Improved_Seurat_Pre_Process(Seuratobj, num_genes=50, write_files=FALSE)

filename="newFile"
location="/Volumes/Samsung_T5/"
write.table(new.file$newExpressionFile, paste0(location=location, filename=filename, "_expression"), sep="\t")
write.table(new.file$newFullExpressionFile, paste0(location=location, filename=filename, "_fullExpression"), sep="\t")
write.table(new.file$newGroupsFile, paste0(location=location, filename=filename, "_groups"), sep="\t", col.names = F)

res.new.file=Main_Doublet_Decon(rawDataFile=new.file$newExpressionFile,
groupsFile=new.file$newGroupsFile,
filename=filename,
location=location,
fullDataFile=NULL,
removeCC=FALSE,
species="hsa",
rhop=1.1,
write=TRUE,
PMF=TRUE,
useFull=FALSE,
heatmap=FALSE,
centroids=TRUE,
num_doubs=100,
only50=FALSE,
min_uniq=4,
nCores=-1)

[EDePasquale]

Hi Andrei,

I think the three links I provided on the previous response to you would answer this question. If it doesn't, just ping me again and I can elaborate.

Best,
Erica