From d465ecffb45e4295cd1b02f38555a91e1780de41 Mon Sep 17 00:00:00 2001 From: Dani VM Date: Tue, 30 Jul 2024 09:45:11 +0200 Subject: [PATCH] renamed logs folder --- .../ANALYSIS/ANALYSIS01_CHARACTERIZATION/04-emmtyper/lablog | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/bu_isciii/templates/characterization/ANALYSIS/ANALYSIS01_CHARACTERIZATION/04-emmtyper/lablog b/bu_isciii/templates/characterization/ANALYSIS/ANALYSIS01_CHARACTERIZATION/04-emmtyper/lablog index c93c8fd6c..d5897933c 100644 --- a/bu_isciii/templates/characterization/ANALYSIS/ANALYSIS01_CHARACTERIZATION/04-emmtyper/lablog +++ b/bu_isciii/templates/characterization/ANALYSIS/ANALYSIS01_CHARACTERIZATION/04-emmtyper/lablog @@ -2,7 +2,7 @@ # Create folders mkdir -p fasta_inputs -mkdir -p slurm_logs +mkdir -p logs # Find all .gz files and write them to a file list # TODO: add if to check >1 fasta files are available in assembly results @@ -25,8 +25,8 @@ cat < _00_unzip_jobarray.sbatch #SBATCH --partition short_idx #SBATCH --array=1-$num_files #SBATCH --chdir $scratch_dir -#SBATCH --output slurm_logs/slurm-%A_%a.out -#SBATCH --error slurm_logs/slurm-%A_%a.err +#SBATCH --output logs/slurm-%A_%a.out +#SBATCH --error logs/slurm-%A_%a.err # Get the file to process file=\$(sed -n "\${SLURM_ARRAY_TASK_ID}p" $ASSEMBLY_LIST)