added krona rhtml to results folder

Author: Daniel-VM

bu_isciii/assets/reports/results/mag.md

@@ -2,7 +2,7 @@
 
 Here we describe the results from the MAG pipeline for multispecies metagenomic analysis.
 
-* krona_results.html​ : Final HTML report with the top 5 species most present in all samples.
+* `krona_results.html`​ : Final HTML report with the top 5 species most present in all samples.
 
 > [!WARNING]
 > Software's versions used in this analysis can be obtained from the  `MultiQC` report.
@@ -11,7 +11,8 @@ Here we describe the results from the MAG pipeline for multispecies metagenomic
 
 Here we describe the results from the (nf-core/taxprofiler)[https://nf-co.re/taxprofiler/1.1.8] pipeline for multispecies taxonomic classification and profiling of shorgun short- and long-read.
 
-* multiqc_report.html​ : Final HTML report collecting numerical stats from each module executed in this pipeline.
+* `multiqc_report.html​`: Final HTML report collecting numerical stats from each module executed in this pipeline.
+* `krona/*.html`: Interactive HTML files generated by Krona, displaying the results of taxonomic classification.
 
 > [!WARNING]
 > Software's versions used in this analysis can be obtained from the  `MultiQC` report.

bu_isciii/templates/mag/RESULTS/lablog_taxprofiler_results

@@ -6,3 +6,5 @@ cd $DELIVERY_FOLDER/taxprofiler
 
 # Links to reports
 ln -s ../../../ANALYSIS/*ANALYSIS01_TAXPROFILER/multiqc/multiqc_report.html .
+ln -s ../../../ANALYSIS/*ANALYSIS01_TAXPROFILER/krona .
+