From 2859dae6654d5efe5f48217888b4bd1a8a6b1529 Mon Sep 17 00:00:00 2001
From: Dani VM <da.valle@isciii.es>
Date: Mon, 29 Jul 2024 13:03:40 +0200
Subject: [PATCH] fix singularity bind

---
 .../ANALYSIS/ANALYSIS01_CHARACTERIZATION/04-emmtyper/lablog     | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/bu_isciii/templates/characterization/ANALYSIS/ANALYSIS01_CHARACTERIZATION/04-emmtyper/lablog b/bu_isciii/templates/characterization/ANALYSIS/ANALYSIS01_CHARACTERIZATION/04-emmtyper/lablog
index a2eec9ce0..c93c8fd6c 100644
--- a/bu_isciii/templates/characterization/ANALYSIS/ANALYSIS01_CHARACTERIZATION/04-emmtyper/lablog
+++ b/bu_isciii/templates/characterization/ANALYSIS/ANALYSIS01_CHARACTERIZATION/04-emmtyper/lablog
@@ -63,7 +63,7 @@ singularity exec \\
     /data/bi/pipelines/singularity-images/singularity-emmtyper.0.2.0--py_0 emmtyper \\
     -w blast \\
     --keep \\
-    --blast_db "${blastdb_path}/cdc_emm_database29042024" \\
+    --blast_db "\${blastdb_path}/cdc_emm_database29042024" \\
     --percent-identity 95 \\
     --culling-limit 5 \\
     --output 01-typing/results_emmtyper.out \\