diff --git a/bu_isciii/templates/characterization/ANALYSIS/ANALYSIS01_CHARACTERIZATION/04-emmtyper/lablog b/bu_isciii/templates/characterization/ANALYSIS/ANALYSIS01_CHARACTERIZATION/04-emmtyper/lablog index d5897933..342dcfbd 100644 --- a/bu_isciii/templates/characterization/ANALYSIS/ANALYSIS01_CHARACTERIZATION/04-emmtyper/lablog +++ b/bu_isciii/templates/characterization/ANALYSIS/ANALYSIS01_CHARACTERIZATION/04-emmtyper/lablog @@ -53,7 +53,7 @@ cat < _01_emmtyper.sbatch # create results folder mkdir -p 01-typing mkdir -p 01-typing/tmps -blastdb_path=/data/bi/references/cdc_emm_blastdb +blastdb_path=/data/bi/references/cdc_emm_blastdb/20240509 # Run emmtyper singularity exec \\ @@ -63,9 +63,9 @@ singularity exec \\ /data/bi/pipelines/singularity-images/singularity-emmtyper.0.2.0--py_0 emmtyper \\ -w blast \\ --keep \\ - --blast_db "\${blastdb_path}/cdc_emm_database29042024" \\ - --percent-identity 95 \\ - --culling-limit 5 \\ + --blast_db "\${blastdb_path}/cdc_emm_database" \\ + --percent-identity 100 \\ + --culling-limit 5 \ --output 01-typing/results_emmtyper.out \\ --output-format verbose \\ ./fasta_inputs/*.fasta