calc_light_merged throws deprecated error

[spencer-tassone]

Brief problem description

I am trying to use the calc_light_merged function to model PAR based on observed PAR and the smoothed PAR produced with calc_light. However, the calc_light_merged function produces an error caused by a function that is deprecated in dplyr (rename_vars). Is there a work around for this issue?

# 1. Load libraries ----
library(tidyverse)
library(nasapower)
library(streamMetabolizer)

# 2. Download shortwave radiation from NASA POWER ----
nasa_par <- get_power(
  community = 'ag',
  pars = c('ALLSKY_SFC_PAR_TOT'), # All Sky Surface PAR Total (W/m^2) 
  temporal_api = 'hourly',
  lonlat = c(-78.6, 38.7),
  dates = '2010-09-19')

# 3. Some data wrangling to create the 2-column data frame needed for calc_light_merged ----
nasa_par_df <- nasa_par %>%
  mutate(dateTime = make_datetime(year = YEAR,
                                  month = MO,
                                  day = DY,
                                  hour = HR),
         solar.time = calc_solar_time(dateTime, -78.6), # throws a warning but still works
         light = convert_SW_to_PAR(ALLSKY_SFC_PAR_TOT)) %>% 
  select(solar.time, light) %>% 
  data.frame()
#> Warning: There was 1 warning in `mutate()`.
#> ℹ In argument: `solar.time = calc_solar_time(dateTime, -78.6)`.
#> Caused by warning in `lookup_timezone()`:
#> ! Google timezone lookup now requires an API key; see http://g.co/dev/maps-no-account or provide the timezone

max_PAR_value <- max(nasa_par_df$light, na.rm = TRUE)

# 4. Apply calc_light_merged ----
light_mod <- nasa_par_df %>%
  mutate(light = calc_light_merged(PAR.obs = nasa_par_df,
                                   solar.time = solar.time,
                                   latitude = 38.7,
                                   longitude = -78.6,
                                   max.PAR = max_PAR_value))
#> Error in `mutate()`:
#> ℹ In argument: `light = calc_light_merged(...)`.
#> Caused by error:
#> ! error in evaluating the argument 'object' in selecting a method for function 'deunitted': `rename_vars()` was deprecated in dplyr 0.8.4 and is now defunct.
#> ℹ Please use `tidyselect::vars_rename()` instead.

^{Created on 2024-10-22 with reprex v2.1.1}

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^{Created on 2024-10-22 with reprex v2.1.1}

[robohall]

Spencer, If it were me I would simply use the calc_light function. We are working on a paper that shows that using such idealized light is not much of a problem. Then when you go to predict that day’s GPP, use the —real-- light from NASA. This way you also main independence of not using light to predict something estimated from the same light. As for the error. 1. Try outside of a big tidyverse function to make sure you get the error outside of mutate. Then if brave you can make the recommended fix in the calc_light_merged function, see if now works, and get a pull request. But I would use calc_light. Bob

…

On Oct 22, 2024, at 1:38 PM, Spencer Tassone, Ph.D. ***@***.***> wrote: Brief problem description I am trying to use the calc_light_merged function to model PAR based on observed PAR and the smoothed PAR produced with calc_light. However, the calc_light_merged function produces an error caused by a function that is deprecated in dplyr (rename_vars). Is there a work around for this issue? # 1. Load libraries ---- library(tidyverse) library(nasapower) library(streamMetabolizer) # 2. Download shortwave radiation from NASA POWER ---- nasa_par <- get_power( community = 'ag', pars = c('ALLSKY_SFC_PAR_TOT'), # All Sky Surface PAR Total (W/m^2) temporal_api = 'hourly', lonlat = c(-78.6, 38.7), dates = '2010-09-19') # 3. Some data wrangling to create the 2-column data frame needed for calc_light_merged ---- nasa_par_df <- nasa_par %>% mutate(dateTime = make_datetime(year = YEAR, month = MO, day = DY, hour = HR), solar.time = calc_solar_time(dateTime, -78.6), # throws a warning but still works light = convert_SW_to_PAR(ALLSKY_SFC_PAR_TOT)) %>% select(solar.time, light) %>% data.frame() #> Warning: There was 1 warning in `mutate()`. #> ℹ In argument: `solar.time = calc_solar_time(dateTime, -78.6)`. #> Caused by warning in `lookup_timezone()`: #> ! Google timezone lookup now requires an API key; see http://g.co/dev/maps-no-account or provide the timezone max_PAR_value <- max(nasa_par_df$light, na.rm = TRUE) # 4. Apply calc_light_merged ---- light_mod <- nasa_par_df %>% mutate(light = calc_light_merged(PAR.obs = nasa_par_df, solar.time = solar.time, latitude = 38.7, longitude = -78.6, max.PAR = max_PAR_value)) #> Error in `mutate()`: #> ℹ In argument: `light = calc_light_merged(...)`. #> Caused by error: #> ! error in evaluating the argument 'object' in selecting a method for function 'deunitted': `rename_vars()` was deprecated in dplyr 0.8.4 and is now defunct. #> ℹ Please use `tidyselect::vars_rename()` instead. 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