provide an option to run filemapper at the end

[ericfeczko]

It would be great if the pipeline could include an option to run filemapper after it finishes. Not sure how feasible that would be to pull off.

[ericearl]

@kathy-snider Didn't we think of a solution for this and just never implemented it?

[ericfeczko]

That would be fantastic if we could implement! I would use the ABCD defaults if it makes it easier -- this allows collaborators already leveraging ABCD protocols to use the pipeline to go fully to BIDS derivatives. I recently found out that this is a chief complaint for some collaborators, so perhaps low effort for huge benefit.

[kathy-snider]

Somehow I didn't get the whole conversation. You just want filemapper to be another stage, right? Like custom-clean, it would run if we gave it a .json file? We can do that. It's just one of many things I would like to do, but I spend all of my time processing BCP!!! I'll put it on my Trello, but don't hold your breath.

…

________________________________ From: ericfeczko <[email protected]> Sent: Friday, September 4, 2020 12:28 PM To: DCAN-Labs/abcd-hcp-pipeline Cc: Kathy Snider; Mention Subject: Re: [DCAN-Labs/abcd-hcp-pipeline] provide an option to run filemapper at the end (#29) That would be fantastic if we could implement! I would use the ABCD defaults if it makes it easier -- this allows collaborators already leveraging ABCD protocols to use the pipeline to go fully to BIDS derivatives. I recently found out that this is a chief complaint for some collaborators, so perhaps low effort for huge benefit. — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub<#29 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AJAQP4CKGW4I32WZBUQRBLLSEE5WJANCNFSM4QWG4SJQ>.

[LuciMoore]

closing enhancement as not planned as we move towards using fMRIPrep