diff --git a/testing/manual/model-configuration-extracting-variables.md b/testing/manual/model-configuration-extracting-variables.md index f85664b46f..4b79e9ce1d 100644 --- a/testing/manual/model-configuration-extracting-variables.md +++ b/testing/manual/model-configuration-extracting-variables.md @@ -11,16 +11,17 @@ Report any issues into GitHub: [open an issue](https://github.com/DARPA-ASKEM/te 2. Create, or open, project named `QA [Your Name]` ### 2. Upload assets -1. From the manual testing [data folder](https://drive.google.com/drive/folders/14z6WAldQky0xgOAM69f6hakXhyHobYMe) -2. Add [SIR Document 1](https://drive.google.com/file/d/1ZQXSGhesif_G0bjQiB9nx0B_BJ1xV1Wx/view?usp=sharing) to your project -3. Add [SIR Document 2](https://drive.google.com/file/d/1U1h5YCBxom9k475QSOzkiIwyi5V159dV/view?usp=sharing) to your project -4. Add [SIR Model](https://drive.google.com/file/d/1F9UWuvwJPZY_XAGflsOIYy4Qrl56KS91/view?usp=sharing) to your project -5. Add [Stratified SIR model](https://drive.google.com/file/d/1r-zfKmHrOub7QT9BfdQEZabfZqveLhIq/view?usp=sharing) to your project -6. Add [SIDARTHE model](https://drive.google.com/drive/folders/14z6WAldQky0xgOAM69f6hakXhyHobYMe) to your project -7. Add [SIR timeseries Dataset 1](https://drive.google.com/file/d/1QM2TL6XrBHIlFOVSavugKAQErls7XtY8/view?usp=sharing) to your project -8. Add [SIR timeseries Dataset 2](https://drive.google.com/file/d/1zKySIpyPN_aa-icxy1e8NHmVtkZs51Fn/view?usp=sharing) to your project -9. Add [SIR contact matrix dataset](https://drive.google.com/file/d/17TByirv-LwunB0gDq46-Ww-SyJZYaHKD/view?usp=sharing) to your project -10. Wait for extractions to finish for uploaded document +1. From the manual testing [data folder](https://drive.google.com/drive/folders/14z6WAldQky0xgOAM69f6hakXhyHobYMe), add these resources to your project by clicking the `Upload` button and dragging these downloaded files onto the popup: + a. [SIR Document 1](https://drive.google.com/file/d/1ZQXSGhesif_G0bjQiB9nx0B_BJ1xV1Wx/view?usp=sharing) + b. [SIR Document 2](https://drive.google.com/file/d/1U1h5YCBxom9k475QSOzkiIwyi5V159dV/view?usp=sharing) + c. [SIR Model](https://drive.google.com/file/d/1F9UWuvwJPZY_XAGflsOIYy4Qrl56KS91/view?usp=sharing) + d. [Stratified SIR model](https://drive.google.com/file/d/1r-zfKmHrOub7QT9BfdQEZabfZqveLhIq/view?usp=sharing) + e. [SIDARTHE model](https://drive.google.com/drive/folders/14z6WAldQky0xgOAM69f6hakXhyHobYMe) + f. [SIDARTHE paper](https://drive.google.com/file/d/1pOb1MuarNEyrDf6I6z96Pdf_hQ9Q3_v0/view?usp=drive_link) + g. [SIR timeseries Dataset 1](https://drive.google.com/file/d/1QM2TL6XrBHIlFOVSavugKAQErls7XtY8/view?usp=sharing) + h. [SIR timeseries Dataset 2](https://drive.google.com/file/d/1zKySIpyPN_aa-icxy1e8NHmVtkZs51Fn/view?usp=sharing) + i. [SIR contact matrix dataset](https://drive.google.com/file/d/17TByirv-LwunB0gDq46-Ww-SyJZYaHKD/view?usp=sharing) +2. Wait a minute or two for the Document Intelligence service to finish extracting artifacts from the uploaded document. ### 3. Extracting configurations from multiple documents and timeseries datasets 1. Create a new workflow @@ -75,10 +76,12 @@ Report any issues into GitHub: [open an issue](https://github.com/DARPA-ASKEM/te ### 5. The gold standard - SIDARTHE model 1. Add the SIDARTHE model to the workflow 2. Create a new "Configure model" operator -3. Attach the SIDARTHE model and SIR Document 1 to the "Configure model" operator +3. Attach `SIDARTHE model` and `SIDARTHE paper` to the "Configure model" operator 4. Extract configurations from the inputs 5. Ensure that the following configurations are extracted: - - There are 3 model configurations from the Document - - These will include phases of the covid-19 epidemic in Italy - - Initial values for S, I, D, A, R, T, H, and E should be extracted for all configurations + - There are 3 model configurations from the Document: + - `Default configuration` + - `High Transmission Scenario` + - `Restrictive NPIs Scenario` + - Initial expressions for S, I, D, A, R, T, H, and E should be extracted for all configurations - Parameter values for alpha, beta, delta, epsilon, eta, gamma, kappa, lambda, mu, nu, rho, theta, xi, zeta, tau, and sigma should be extracted for all configurations