Number of success in mpbs.bed and fulltest_statistics.txt files did not match

[hhvu0102]

Hello,

I tested running RGT by running the example files from here (https://reg-gen.readthedocs.io/en/latest/motif_analysis/tutorial.html#full-site-test). Here are my commands:

rgt-motifanalysis matching --input-files input/regions_K562.bed input/background.bed --organism hg19
rgt-motifanalysis enrichment input/background.bed input/regions_K562.bed --organism hg19

From here there are two problems.

1. I got the results file but the mpbs_ev.bed file was empty.

wc -l enrichment/regions_K562/mpbs_ev.bed
0 enrichment/regions_K562/mpbs_ev.bed

Did this mean my run was wrong?

2. Number of success in mpbs.bed in the match folder and fulltest_statistics.txt files did not match.

head -n 2  enrichment/regions_K562/fulltest_statistics.txt                                           

FACTOR  P-VALUE CORR.P-VALUE    A       B       C       D       FREQ    BACK.FREQ.      GENES
MA0036.3.GATA2  1.3782e-02      1.0000e+00      59      299     57      458     16.48%   [...]

Here, A = 59

grep MA0036.3.GATA2 match/regions_K562_mpbs.bed | wc -l
64

Did the match number got filtered somehow from the match/regions_K562_mpbs.bed file?

Thank you!