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speed up analyses (particularly clustering) #66

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andrewheusser opened this issue May 12, 2017 · 0 comments
Open

speed up analyses (particularly clustering) #66

andrewheusser opened this issue May 12, 2017 · 0 comments

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@andrewheusser
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andrewheusser commented May 12, 2017

The clustering scores can take a while to compute when correcting with permutation tests. We already have a parallelized solution over analysis 'chunks' by setting parallel=True. Two ways to speed this up are:

  1. optimize the multiprocessing code (may not be implemented in the most efficient way)

  2. deriving an analytic solution to correct the clustering scores instead of relying on permutations

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