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README.md

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3. Automatically detect depth (i.e. [Zheng et al. 2021](https://www.mdpi.com/2072-4292/13/10/1945)) and shadows in side scan channels .
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4. Export un-rectified sonar tiles with water column present (WCP) AND/OR export un-rectified sonograms with water column removed (WCR) using Humminbird depth estimates OR automated depth detections.
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4. Correct sonar backscatter with Empiracle Gain Normalization.
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5. Export speed corrected un-rectified sonograms.
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5. Export un-rectified sonar tiles with water column present (WCP) AND/OR export un-rectified sonograms with water column removed (WCR) using Humminbird depth estimates OR automated depth detections.
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6. Smooth and interpolate GPS track points.
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6. Export speed corrected un-rectified sonograms.
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7. Export georectified WCP (spatially inaccurate due to presence of water column) AND/OR WCR sonar imagery for use in GIS w/wo shadows removed.
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7. Smooth and interpolate GPS track points.
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8. Mosaic georectified sonar imagery.
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8. Export georectified WCP (spatially inaccurate due to presence of water column) AND/OR WCR sonar imagery for use in GIS w/wo shadows removed.
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9. Mosaic georectified sonar imagery.
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10. Automatically segment and classify substrate patches.
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More information on PING-Mapper exports can be found [here](https://cameronbodine.github.io/PINGMapper/docs/gettingstarted/Exports.html).
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## Workflows in the Pipeline
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1. Automatic substrate classification
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2. GUI front-end, either as standalone software, or QGIS plugin
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3. Imagery corrections (radiometric, attenuation, etc.)
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4. So much more...
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1. GUI front-end, either as standalone software, or QGIS plugin
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2. So much more...
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# Software Documentation
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## Website
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### Code that made the paper and v1.0.0
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[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.6604785.svg)](https://doi.org/10.5281/zenodo.6604785)
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## PING-Mapper v2.0.0
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The second version of PING-Mapper is under development. Scientific articles documenting the new functionality will be posted here when available.
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## PING-Mapper v2.0.0-alpha
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The second version of PING-Mapper is available now as an alpha release. Scientific articles documenting the new functionality will be posted here when available.
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# Installation
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View the [installation instructions](https://cameronbodine.github.io/PINGMapper/docs/gettingstarted/Installation.html).

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