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Run failure because of a dependency (semver) has removed functions #122

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dilawar opened this issue Jul 23, 2021 · 2 comments · May be fixed by #131
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Run failure because of a dependency (semver) has removed functions #122

dilawar opened this issue Jul 23, 2021 · 2 comments · May be fixed by #131

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@dilawar
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dilawar commented Jul 23, 2021 

[centos@ip-172-26-6-166 karnataka (joss_lint_errors)]$ python3 age_rt.py 
WARNING (theano.tensor.blas): Using NumPy C-API based implementation for BLAS functions.
Traceback (most recent call last):
  File "/home/centos/Work/FORKES/epimargin/studies/karnataka/age_rt.py", line 3, in <module>
    from epimargin.estimators import analytical_MPVS
  File "/home/centos/Work/FORKES/epimargin/epimargin/estimators.py", line 7, in <module>
    import pymc3 as pm
  File "/home/centos/.local/lib/python3.9/site-packages/pymc3-3.11.2-py3.9.egg/pymc3/__init__.py", line 34, in <module>
    if not semver.match(theano.__version__, ">=1.1.2"):
AttributeError: module 'semver' has no attribute 'match'

The package semver has deprecated/removed the match function (python-semver/python-semver#236).
@dilawar dilawar mentioned this issue Jul 23, 2021
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@dilawar
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dilawar commented Jul 24, 2021

This has been patched in pymc3(pymc-devs/pymc#4546).

dilawar pushed a commit to dilawar/epimargin that referenced this issue Jul 24, 2021
fix COVID-IWG#122: Pinning semver version 2.12.0
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@dilawar
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dilawar commented Jul 24, 2021 •
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pinning semver==2.12.0 fixed the issue. It is related to upstream dependencies.

@dilawar dilawar closed this as completed Jul 24, 2021
@dilawar dilawar mentioned this issue Aug 7, 2021
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Fixes post #129 dilawar/epimargin
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@dilawar