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BiocPy/rds2py
get rid of scipy as a hard dependency

same could be said about all the things that convert into BiocPy classes. These should be made into an optional installation rather than dragging them into the install when they might not be needed.
  • LTLA
  • Opened 
    11 days ago
  • #56

BiocPy/rds2py
dgCMatrix parsed without dim names

Hi all, When parsing dgCMatrix objects (and maybe other sparse matrix classes), the Dimnames attribute is missing in the parsed object. The issue seems to come from the following lines: https://github.com/BiocPy/rds2py/blob/c78706a443792a5e597d7bde503f68d2f0353309/src/rds2py/read_matrix.py#L95-L99 ...
  • nuno-agostinho
  • 2
  • Opened 
    on Jan 10
  • #54

BiocPy/rds2py
wheel production on linux references macosx?

  • vjcitn
  • 3
  • Opened 
    on Oct 8, 2024
  • #46

BiocPy/rds2py
pip install get an error

Hi, when pip install rds2py, there is an error. Building wheels for collected packages: rds2py Building wheel for rds2py (pyproject.toml) ... error error: subprocess-exited-with-error × Building ...
good first issue
help wanted
  • wangzhichao1990
  • 4
  • Opened 
    on Apr 7, 2024
  • #38

BiocPy/rds2py
Cannot open include file: 'rds2cpp/rds2cpp.hpp': No such file or directory

pip setup.py install error Cannot open include file: rds2cpp/rds2cpp.hpp : No such file or directory
  • mulkan
  • 1
  • Opened 
    on Nov 19, 2023
  • #23

BiocPy/rds2py
Latest pypi version is still using the old camelCase interface?

When I call as_summarized_experiment() with the latest version of rds2py from PyPi, I get the following error: TypeError: SummarizedExperiment.__init__() got an unexpected keyword argument rowData ...
  • jackkamm
  • 4
  • Opened 
    on Oct 30, 2023
  • #19

BiocPy/rds2py
Update to rds2cpp v1.1.0

This should fix some weird igraph-related issues and also improve performance.
  • LTLA
  • 1
  • Opened 
    on Sep 4, 2023
  • #14

BiocPy/rds2py
as_dense_matrix dtype

Hi, When constructing the numpy array with appropriate dimensions from its buffer, the dtype of the buffered array should be passed as argument to numpy.ndarray otherwise TypeError: buffer is too small ...
  • vadmbertr
  • 4
  • Opened 
    on Jun 12, 2023
  • #9

BiocPy/rds2py
Another day, another bump to rds2cpp

Fetch HEAD to obtain fix for LTLA/rds2cpp#6. Incidentally, you should get your bindings to convert exceptions properly, see here.
  • LTLA
  • Opened 
    on Apr 12, 2023
  • #6

BiocPy/rds2py
Update to the latest `HEAD` of rds2cpp

Minor bugfix for ALTREP handling, see LTLA/rds2cpp#5.
  • LTLA
  • Opened 
    on Mar 25, 2023
  • #3
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