docker build error

[cmatKhan]

There seems to be a dependency conflict. The dockerfile build errors with the following:

Installed /usr/local/lib/python3.8/dist-packages/Jinja2-3.1.2-py3.8.egg
error: docutils 0.18.1 is installed but docutils<0.18 is required by {'sphinx-rtd-theme'}
The command '/bin/sh -c cd /PascalX/python/ && python3 setup.py install' returned a non-zero code: 1

[sandeepacharya464]

I resolved this issue by adding "docutils<0.18" requirement in setup.py. After fixing this issue, you get similar version related error with numba and I fixed that by adding "numpy>=1.18.0, <1.23" requirement in setup.py. But the build fails even after that.

setup(
name='PascalX',
description='work in progress',
version=find_version("PascalX", "init.py"),
author='D. Krefl',
author_email='[email protected]',
packages=find_packages(),
url='https://github.com/BergmannLab/PascalX',
license='LICENSE',
long_description=open('README.md').read(),
install_requires=[
"docutils<0.18",
"cffi>=1.0.0",
"numba>=0.51.2",
"matplotlib>=3.1.0",
"sortedcontainers>=2.1.0",
"tqdm>=4.43.0",
"scipy>=1.4.0",
"numpy>=1.18.0, <1.23",
"fastnumbers>=3.1.0",
"seaborn>=0.11.0",
"progressbar>=2.5",
"sphinx>=3.2.1",
"sphinx-rtd-theme>=0.5.0"
],
setup_requires=["cffi","path.py"],
cffi_modules=["wchissum.py:ffibuilder","hpstats.py:ffibuilder"],
zip_safe=False,
)

#12 72.92 Reading https://pypi.org/simple/llvmlite/
#12 73.22 No local packages or working download links found for llvmlite<0.40,>=0.39.0dev0
#12 73.22 error: Could not find suitable distribution for Requirement.parse('llvmlite<0.40,>=0.39.0dev0')
executor failed running [/bin/sh -c cd /PascalX/python/ && python3 setup.py install]: exit code: 1

Clearly, there is a lot of issue with this dockerfile build.

[sandeepacharya464]

the error with llvmlite can be fixed by adding numba < 0.52.0 requirement in setup.py. Then the build worked for me.

[Dan-RAI]

Thanks for spotting the requirement errors. Numba is currently not anymore in use and can be dropped. The install will be fixed asap.