Hard-coded file paths

[FelixTheStudent]

Hi MONET-team,

love the tool and the work everyone put in.

One issue I have is that MONET writes temporary files to its installation directory. This means that on a UNIX cluster, I can't run two jobs in parallel without them overwriting each other and giving an error around a Stale file handle. Also, I can not offer a write-protected version to all HPC cluster users.

Would you be willing to fix this? I believe the following files are written upon every MONET run, but there might be others:

• src/K1_code/data/input_network.txt
• src/K1_code/runTusk_parameters.txt
• src/K1_code/data/cluster_results

Best,

Felix