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arvados_functions.R
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arvados_functions.R
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#' Arvados API
#' The API to interact with Arvados.
#'
#' Auto-generated code by googleAuthR::gar_create_api_skeleton
#' at 2017-07-19 18:57:49
#' filename: arvados_functions.R
#' api_json: apis
#'
#' @details
#' Authentication scopes used are:
#' \itemize{
#' \item https://api.curoverse.com/auth/arvados
#' \item https://api.curoverse.com/auth/arvados.readonly
#' }
#'
#' @docType package
#' @name arvados_googleAuthR
#'
NULL
## NULL
#' A helper function that tests whether an object is either NULL _or_
#' a list of NULLs
#'
#' @keywords internal
is.NullOb <- function(x) is.null(x) | all(sapply(x, is.null))
#' Recursively step down into list, removing all such objects
#'
#' @keywords internal
rmNullObs <- function(x) {
x <- Filter(Negate(is.NullOb), x)
lapply(x, function(x) if (is.list(x))
rmNullObs(x) else x)
}
#' Gets a User's metadata by UUID.
#'
#' Autogenerated via \code{\link[googleAuthR]{gar_create_api_skeleton}}
#'
#' @seealso \href{http://doc.arvados.org/api/index.html}{Google Documentation}
#'
#' @details
#' Authentication scopes used by this function are:
#' \itemize{
#' \item https://api.curoverse.com/auth/arvados
#' \item https://api.curoverse.com/auth/arvados.readonly
#' }
#'
#' Set \code{options(googleAuthR.scopes.selected = c(https://api.curoverse.com/auth/arvados, https://api.curoverse.com/auth/arvados.readonly)}
#' Then run \code{googleAuthR::gar_auth()} to authenticate.
#' See \code{\link[googleAuthR]{gar_auth}} for details.
#'
#' @param uuid The UUID of the User in question
#' @importFrom googleAuthR gar_api_generator
#' @export
users.get <- function(uuid) {
url <- sprintf("https://qr1hi.arvadosapi.com/arvados/v1/users/%s", uuid)
# arvados.users.get
f <- googleAuthR::gar_api_generator(url, "GET", data_parse_function = function(x) x)
f()
}
#' List Users. The <code>list</code> method returns a <a href='/api/resources.html'>resource list</a> of matching Users. For example: <pre> { 'kind':'arvados#userList', 'etag':'', 'self_link':'', 'next_page_token':'', 'next_link':'', 'items':[ ... ], 'items_available':745, '_profile':{ 'request_time':0.157236317 } </pre>
#'
#' Autogenerated via \code{\link[googleAuthR]{gar_create_api_skeleton}}
#'
#' @seealso \href{http://doc.arvados.org/api/index.html}{Google Documentation}
#'
#' @details
#' Authentication scopes used by this function are:
#' \itemize{
#' \item https://api.curoverse.com/auth/arvados
#' \item https://api.curoverse.com/auth/arvados.readonly
#' }
#'
#' Set \code{options(googleAuthR.scopes.selected = c(https://api.curoverse.com/auth/arvados, https://api.curoverse.com/auth/arvados.readonly)}
#' Then run \code{googleAuthR::gar_auth()} to authenticate.
#' See \code{\link[googleAuthR]{gar_auth}} for details.
#'
#' @param filters
#' @param where
#' @param order
#' @param select
#' @param distinct
#' @param limit
#' @param offset
#' @param count
#' @importFrom googleAuthR gar_api_generator
#' @export
users.list <- function(filters, where, order, select, distinct, limit, offset, count) {
url <- "https://qr1hi.arvadosapi.com/arvados/v1/users"
# arvados.users.list
pars = list(filters = filters, where = where, order = order, select = select,
distinct = distinct, limit = limit, offset = offset, count = count)
f <- googleAuthR::gar_api_generator(url, "GET", pars_args = rmNullObs(pars),
data_parse_function = function(x) x)
f()
}
#' Create a new User.
#'
#' Autogenerated via \code{\link[googleAuthR]{gar_create_api_skeleton}}
#'
#' @seealso \href{http://doc.arvados.org/api/index.html}{Google Documentation}
#'
#' @details
#' Authentication scopes used by this function are:
#' \itemize{
#' \item https://api.curoverse.com/auth/arvados
#' }
#'
#' Set \code{options(googleAuthR.scopes.selected = c(https://api.curoverse.com/auth/arvados)}
#' Then run \code{googleAuthR::gar_auth()} to authenticate.
#' See \code{\link[googleAuthR]{gar_auth}} for details.
#'
#' @param The \link{} object to pass to this method
#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision
#' @importFrom googleAuthR gar_api_generator
#' @family functions
#' @export
users.create <- function(NA. = NULL, ensure_unique_name) {
url <- "https://qr1hi.arvadosapi.com/arvados/v1/users"
# arvados.users.create
pars = list(ensure_unique_name = ensure_unique_name)
f <- googleAuthR::gar_api_generator(url, "POST", pars_args = rmNullObs(pars),
data_parse_function = function(x) x)
stopifnot(inherits(, "gar_"))
f(the_body = )
}
#' Update attributes of an existing User.
#'
#' Autogenerated via \code{\link[googleAuthR]{gar_create_api_skeleton}}
#'
#' @seealso \href{http://doc.arvados.org/api/index.html}{Google Documentation}
#'
#' @details
#' Authentication scopes used by this function are:
#' \itemize{
#' \item https://api.curoverse.com/auth/arvados
#' }
#'
#' Set \code{options(googleAuthR.scopes.selected = c(https://api.curoverse.com/auth/arvados)}
#' Then run \code{googleAuthR::gar_auth()} to authenticate.
#' See \code{\link[googleAuthR]{gar_auth}} for details.
#'
#' @param The \link{} object to pass to this method
#' @param uuid The UUID of the User in question
#' @importFrom googleAuthR gar_api_generator
#' @family functions
#' @export
users.update <- function(NA. = NULL, uuid) {
url <- sprintf("https://qr1hi.arvadosapi.com/arvados/v1/users/%s", uuid)
# arvados.users.update
f <- googleAuthR::gar_api_generator(url, "PUT", data_parse_function = function(x) x)
stopifnot(inherits(, "gar_"))
f(the_body = )
}
#' Delete an existing User.
#'
#' Autogenerated via \code{\link[googleAuthR]{gar_create_api_skeleton}}
#'
#' @seealso \href{http://doc.arvados.org/api/index.html}{Google Documentation}
#'
#' @details
#' Authentication scopes used by this function are:
#' \itemize{
#' \item https://api.curoverse.com/auth/arvados
#' }
#'
#' Set \code{options(googleAuthR.scopes.selected = c(https://api.curoverse.com/auth/arvados)}
#' Then run \code{googleAuthR::gar_auth()} to authenticate.
#' See \code{\link[googleAuthR]{gar_auth}} for details.
#'
#' @param uuid The UUID of the User in question
#' @importFrom googleAuthR gar_api_generator
#' @export
users.delete <- function(uuid) {
url <- sprintf("https://qr1hi.arvadosapi.com/arvados/v1/users/%s", uuid)
# arvados.users.delete
f <- googleAuthR::gar_api_generator(url, "DELETE", data_parse_function = function(x) x)
f()
}
#' current users
#'
#' Autogenerated via \code{\link[googleAuthR]{gar_create_api_skeleton}}
#'
#' @seealso \href{http://doc.arvados.org/api/index.html}{Google Documentation}
#'
#' @details
#' Authentication scopes used by this function are:
#' \itemize{
#' \item https://api.curoverse.com/auth/arvados
#' }
#'
#' Set \code{options(googleAuthR.scopes.selected = c(https://api.curoverse.com/auth/arvados)}
#' Then run \code{googleAuthR::gar_auth()} to authenticate.
#' See \code{\link[googleAuthR]{gar_auth}} for details.
#'
#' #' @importFrom googleAuthR gar_api_generator
#' @export
users.current <- function() {
url <- "https://qr1hi.arvadosapi.com/arvados/v1/users/current"
# arvados.users.current
f <- googleAuthR::gar_api_generator(url, "GET", data_parse_function = function(x) x)
f()
}
#' system users
#'
#' Autogenerated via \code{\link[googleAuthR]{gar_create_api_skeleton}}
#'
#' @seealso \href{http://doc.arvados.org/api/index.html}{Google Documentation}
#'
#' @details
#' Authentication scopes used by this function are:
#' \itemize{
#' \item https://api.curoverse.com/auth/arvados
#' }
#'
#' Set \code{options(googleAuthR.scopes.selected = c(https://api.curoverse.com/auth/arvados)}
#' Then run \code{googleAuthR::gar_auth()} to authenticate.
#' See \code{\link[googleAuthR]{gar_auth}} for details.
#'
#' #' @importFrom googleAuthR gar_api_generator
#' @export
users.system <- function() {
url <- "https://qr1hi.arvadosapi.com/arvados/v1/users/system"
# arvados.users.system
f <- googleAuthR::gar_api_generator(url, "GET", data_parse_function = function(x) x)
f()
}
#' activate users
#'
#' Autogenerated via \code{\link[googleAuthR]{gar_create_api_skeleton}}
#'
#' @seealso \href{http://doc.arvados.org/api/index.html}{Google Documentation}
#'
#' @details
#' Authentication scopes used by this function are:
#' \itemize{
#' \item https://api.curoverse.com/auth/arvados
#' }
#'
#' Set \code{options(googleAuthR.scopes.selected = c(https://api.curoverse.com/auth/arvados)}
#' Then run \code{googleAuthR::gar_auth()} to authenticate.
#' See \code{\link[googleAuthR]{gar_auth}} for details.
#'
#' @param uuid
#' @importFrom googleAuthR gar_api_generator
#' @export
users.activate <- function(uuid) {
url <- sprintf("https://qr1hi.arvadosapi.com/arvados/v1/users/%s/activate", uuid)
# arvados.users.activate
f <- googleAuthR::gar_api_generator(url, "POST", data_parse_function = function(x) x)
f()
}
#' setup users
#'
#' Autogenerated via \code{\link[googleAuthR]{gar_create_api_skeleton}}
#'
#' @seealso \href{http://doc.arvados.org/api/index.html}{Google Documentation}
#'
#' @details
#' Authentication scopes used by this function are:
#' \itemize{
#' \item https://api.curoverse.com/auth/arvados
#' }
#'
#' Set \code{options(googleAuthR.scopes.selected = c(https://api.curoverse.com/auth/arvados)}
#' Then run \code{googleAuthR::gar_auth()} to authenticate.
#' See \code{\link[googleAuthR]{gar_auth}} for details.
#'
#' @param user
#' @param openid_prefix
#' @param repo_name
#' @param vm_uuid
#' @param send_notification_email
#' @importFrom googleAuthR gar_api_generator
#' @export
users.setup <- function(user, openid_prefix, repo_name, vm_uuid, send_notification_email) {
url <- "https://qr1hi.arvadosapi.com/arvados/v1/users/setup"
# arvados.users.setup
pars = list(user = user, openid_prefix = openid_prefix, repo_name = repo_name,
vm_uuid = vm_uuid, send_notification_email = send_notification_email)
f <- googleAuthR::gar_api_generator(url, "POST", pars_args = rmNullObs(pars),
data_parse_function = function(x) x)
f()
}
#' unsetup users
#'
#' Autogenerated via \code{\link[googleAuthR]{gar_create_api_skeleton}}
#'
#' @seealso \href{http://doc.arvados.org/api/index.html}{Google Documentation}
#'
#' @details
#' Authentication scopes used by this function are:
#' \itemize{
#' \item https://api.curoverse.com/auth/arvados
#' }
#'
#' Set \code{options(googleAuthR.scopes.selected = c(https://api.curoverse.com/auth/arvados)}
#' Then run \code{googleAuthR::gar_auth()} to authenticate.
#' See \code{\link[googleAuthR]{gar_auth}} for details.
#'
#' @param uuid
#' @importFrom googleAuthR gar_api_generator
#' @export
users.unsetup <- function(uuid) {
url <- sprintf("https://qr1hi.arvadosapi.com/arvados/v1/users/%s/unsetup", uuid)
# arvados.users.unsetup
f <- googleAuthR::gar_api_generator(url, "POST", data_parse_function = function(x) x)
f()
}
#' List Users. The <code>list</code> method returns a <a href='/api/resources.html'>resource list</a> of matching Users. For example: <pre> { 'kind':'arvados#userList', 'etag':'', 'self_link':'', 'next_page_token':'', 'next_link':'', 'items':[ ... ], 'items_available':745, '_profile':{ 'request_time':0.157236317 } </pre>
#'
#' Autogenerated via \code{\link[googleAuthR]{gar_create_api_skeleton}}
#'
#' @seealso \href{http://doc.arvados.org/api/index.html}{Google Documentation}
#'
#' @details
#' Authentication scopes used by this function are:
#' \itemize{
#' \item https://api.curoverse.com/auth/arvados
#' \item https://api.curoverse.com/auth/arvados.readonly
#' }
#'
#' Set \code{options(googleAuthR.scopes.selected = c(https://api.curoverse.com/auth/arvados, https://api.curoverse.com/auth/arvados.readonly)}
#' Then run \code{googleAuthR::gar_auth()} to authenticate.
#' See \code{\link[googleAuthR]{gar_auth}} for details.
#'
#' @param filters
#' @param where
#' @param order
#' @param select
#' @param distinct
#' @param limit
#' @param offset
#' @param count
#' @importFrom googleAuthR gar_api_generator
#' @export
users.list <- function(filters, where, order, select, distinct, limit, offset, count) {
url <- "https://qr1hi.arvadosapi.com/arvados/v1/users"
# arvados.users.list
pars = list(filters = filters, where = where, order = order, select = select,
distinct = distinct, limit = limit, offset = offset, count = count)
f <- googleAuthR::gar_api_generator(url, "GET", pars_args = rmNullObs(pars),
data_parse_function = function(x) x)
f()
}
#' show users
#'
#' Autogenerated via \code{\link[googleAuthR]{gar_create_api_skeleton}}
#'
#' @seealso \href{http://doc.arvados.org/api/index.html}{Google Documentation}
#'
#' @details
#' Authentication scopes used by this function are:
#' \itemize{
#' \item https://api.curoverse.com/auth/arvados
#' }
#'
#' Set \code{options(googleAuthR.scopes.selected = c(https://api.curoverse.com/auth/arvados)}
#' Then run \code{googleAuthR::gar_auth()} to authenticate.
#' See \code{\link[googleAuthR]{gar_auth}} for details.
#'
#' @param uuid
#' @importFrom googleAuthR gar_api_generator
#' @export
users.show <- function(uuid) {
url <- sprintf("https://qr1hi.arvadosapi.com/arvados/v1/users/%s", uuid)
# arvados.users.show
f <- googleAuthR::gar_api_generator(url, "GET", data_parse_function = function(x) x)
f()
}
#' destroy users
#'
#' Autogenerated via \code{\link[googleAuthR]{gar_create_api_skeleton}}
#'
#' @seealso \href{http://doc.arvados.org/api/index.html}{Google Documentation}
#'
#' @details
#' Authentication scopes used by this function are:
#' \itemize{
#' \item https://api.curoverse.com/auth/arvados
#' }
#'
#' Set \code{options(googleAuthR.scopes.selected = c(https://api.curoverse.com/auth/arvados)}
#' Then run \code{googleAuthR::gar_auth()} to authenticate.
#' See \code{\link[googleAuthR]{gar_auth}} for details.
#'
#' @param uuid
#' @importFrom googleAuthR gar_api_generator
#' @export
users.destroy <- function(uuid) {
url <- sprintf("https://qr1hi.arvadosapi.com/arvados/v1/users/%s", uuid)
# arvados.users.destroy
f <- googleAuthR::gar_api_generator(url, "DELETE", data_parse_function = function(x) x)
f()
}
#' Gets a Workflow's metadata by UUID.
#'
#' Autogenerated via \code{\link[googleAuthR]{gar_create_api_skeleton}}
#'
#' @seealso \href{http://doc.arvados.org/api/index.html}{Google Documentation}
#'
#' @details
#' Authentication scopes used by this function are:
#' \itemize{
#' \item https://api.curoverse.com/auth/arvados
#' \item https://api.curoverse.com/auth/arvados.readonly
#' }
#'
#' Set \code{options(googleAuthR.scopes.selected = c(https://api.curoverse.com/auth/arvados, https://api.curoverse.com/auth/arvados.readonly)}
#' Then run \code{googleAuthR::gar_auth()} to authenticate.
#' See \code{\link[googleAuthR]{gar_auth}} for details.
#'
#' @param uuid The UUID of the Workflow in question
#' @importFrom googleAuthR gar_api_generator
#' @export
workflows.get <- function(uuid) {
url <- sprintf("https://qr1hi.arvadosapi.com/arvados/v1/workflows/%s", uuid)
# arvados.workflows.get
f <- googleAuthR::gar_api_generator(url, "GET", data_parse_function = function(x) x)
f()
}
#' List Workflows. The <code>list</code> method returns a <a href='/api/resources.html'>resource list</a> of matching Workflows. For example: <pre> { 'kind':'arvados#workflowList', 'etag':'', 'self_link':'', 'next_page_token':'', 'next_link':'', 'items':[ ... ], 'items_available':745, '_profile':{ 'request_time':0.157236317 } </pre>
#'
#' Autogenerated via \code{\link[googleAuthR]{gar_create_api_skeleton}}
#'
#' @seealso \href{http://doc.arvados.org/api/index.html}{Google Documentation}
#'
#' @details
#' Authentication scopes used by this function are:
#' \itemize{
#' \item https://api.curoverse.com/auth/arvados
#' \item https://api.curoverse.com/auth/arvados.readonly
#' }
#'
#' Set \code{options(googleAuthR.scopes.selected = c(https://api.curoverse.com/auth/arvados, https://api.curoverse.com/auth/arvados.readonly)}
#' Then run \code{googleAuthR::gar_auth()} to authenticate.
#' See \code{\link[googleAuthR]{gar_auth}} for details.
#'
#' @param filters
#' @param where
#' @param order
#' @param select
#' @param distinct
#' @param limit
#' @param offset
#' @param count
#' @importFrom googleAuthR gar_api_generator
#' @export
workflows.list <- function(filters, where, order, select, distinct, limit, offset,
count) {
url <- "https://qr1hi.arvadosapi.com/arvados/v1/workflows"
# arvados.workflows.list
pars = list(filters = filters, where = where, order = order, select = select,
distinct = distinct, limit = limit, offset = offset, count = count)
f <- googleAuthR::gar_api_generator(url, "GET", pars_args = rmNullObs(pars),
data_parse_function = function(x) x)
f()
}
#' Create a new Workflow.
#'
#' Autogenerated via \code{\link[googleAuthR]{gar_create_api_skeleton}}
#'
#' @seealso \href{http://doc.arvados.org/api/index.html}{Google Documentation}
#'
#' @details
#' Authentication scopes used by this function are:
#' \itemize{
#' \item https://api.curoverse.com/auth/arvados
#' }
#'
#' Set \code{options(googleAuthR.scopes.selected = c(https://api.curoverse.com/auth/arvados)}
#' Then run \code{googleAuthR::gar_auth()} to authenticate.
#' See \code{\link[googleAuthR]{gar_auth}} for details.
#'
#' @param The \link{} object to pass to this method
#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision
#' @importFrom googleAuthR gar_api_generator
#' @family functions
#' @export
workflows.create <- function(NA. = NULL, ensure_unique_name) {
url <- "https://qr1hi.arvadosapi.com/arvados/v1/workflows"
# arvados.workflows.create
pars = list(ensure_unique_name = ensure_unique_name)
f <- googleAuthR::gar_api_generator(url, "POST", pars_args = rmNullObs(pars),
data_parse_function = function(x) x)
stopifnot(inherits(, "gar_"))
f(the_body = )
}
#' Update attributes of an existing Workflow.
#'
#' Autogenerated via \code{\link[googleAuthR]{gar_create_api_skeleton}}
#'
#' @seealso \href{http://doc.arvados.org/api/index.html}{Google Documentation}
#'
#' @details
#' Authentication scopes used by this function are:
#' \itemize{
#' \item https://api.curoverse.com/auth/arvados
#' }
#'
#' Set \code{options(googleAuthR.scopes.selected = c(https://api.curoverse.com/auth/arvados)}
#' Then run \code{googleAuthR::gar_auth()} to authenticate.
#' See \code{\link[googleAuthR]{gar_auth}} for details.
#'
#' @param The \link{} object to pass to this method
#' @param uuid The UUID of the Workflow in question
#' @importFrom googleAuthR gar_api_generator
#' @family functions
#' @export
workflows.update <- function(NA. = NULL, uuid) {
url <- sprintf("https://qr1hi.arvadosapi.com/arvados/v1/workflows/%s", uuid)
# arvados.workflows.update
f <- googleAuthR::gar_api_generator(url, "PUT", data_parse_function = function(x) x)
stopifnot(inherits(, "gar_"))
f(the_body = )
}
#' Delete an existing Workflow.
#'
#' Autogenerated via \code{\link[googleAuthR]{gar_create_api_skeleton}}
#'
#' @seealso \href{http://doc.arvados.org/api/index.html}{Google Documentation}
#'
#' @details
#' Authentication scopes used by this function are:
#' \itemize{
#' \item https://api.curoverse.com/auth/arvados
#' }
#'
#' Set \code{options(googleAuthR.scopes.selected = c(https://api.curoverse.com/auth/arvados)}
#' Then run \code{googleAuthR::gar_auth()} to authenticate.
#' See \code{\link[googleAuthR]{gar_auth}} for details.
#'
#' @param uuid The UUID of the Workflow in question
#' @importFrom googleAuthR gar_api_generator
#' @export
workflows.delete <- function(uuid) {
url <- sprintf("https://qr1hi.arvadosapi.com/arvados/v1/workflows/%s", uuid)
# arvados.workflows.delete
f <- googleAuthR::gar_api_generator(url, "DELETE", data_parse_function = function(x) x)
f()
}
#' List Workflows. The <code>list</code> method returns a <a href='/api/resources.html'>resource list</a> of matching Workflows. For example: <pre> { 'kind':'arvados#workflowList', 'etag':'', 'self_link':'', 'next_page_token':'', 'next_link':'', 'items':[ ... ], 'items_available':745, '_profile':{ 'request_time':0.157236317 } </pre>
#'
#' Autogenerated via \code{\link[googleAuthR]{gar_create_api_skeleton}}
#'
#' @seealso \href{http://doc.arvados.org/api/index.html}{Google Documentation}
#'
#' @details
#' Authentication scopes used by this function are:
#' \itemize{
#' \item https://api.curoverse.com/auth/arvados
#' \item https://api.curoverse.com/auth/arvados.readonly
#' }
#'
#' Set \code{options(googleAuthR.scopes.selected = c(https://api.curoverse.com/auth/arvados, https://api.curoverse.com/auth/arvados.readonly)}
#' Then run \code{googleAuthR::gar_auth()} to authenticate.
#' See \code{\link[googleAuthR]{gar_auth}} for details.
#'
#' @param filters
#' @param where
#' @param order
#' @param select
#' @param distinct
#' @param limit
#' @param offset
#' @param count
#' @importFrom googleAuthR gar_api_generator
#' @export
workflows.list <- function(filters, where, order, select, distinct, limit, offset,
count) {
url <- "https://qr1hi.arvadosapi.com/arvados/v1/workflows"
# arvados.workflows.list
pars = list(filters = filters, where = where, order = order, select = select,
distinct = distinct, limit = limit, offset = offset, count = count)
f <- googleAuthR::gar_api_generator(url, "GET", pars_args = rmNullObs(pars),
data_parse_function = function(x) x)
f()
}
#' show workflows
#'
#' Autogenerated via \code{\link[googleAuthR]{gar_create_api_skeleton}}
#'
#' @seealso \href{http://doc.arvados.org/api/index.html}{Google Documentation}
#'
#' @details
#' Authentication scopes used by this function are:
#' \itemize{
#' \item https://api.curoverse.com/auth/arvados
#' }
#'
#' Set \code{options(googleAuthR.scopes.selected = c(https://api.curoverse.com/auth/arvados)}
#' Then run \code{googleAuthR::gar_auth()} to authenticate.
#' See \code{\link[googleAuthR]{gar_auth}} for details.
#'
#' @param uuid
#' @importFrom googleAuthR gar_api_generator
#' @export
workflows.show <- function(uuid) {
url <- sprintf("https://qr1hi.arvadosapi.com/arvados/v1/workflows/%s", uuid)
# arvados.workflows.show
f <- googleAuthR::gar_api_generator(url, "GET", data_parse_function = function(x) x)
f()
}
#' destroy workflows
#'
#' Autogenerated via \code{\link[googleAuthR]{gar_create_api_skeleton}}
#'
#' @seealso \href{http://doc.arvados.org/api/index.html}{Google Documentation}
#'
#' @details
#' Authentication scopes used by this function are:
#' \itemize{
#' \item https://api.curoverse.com/auth/arvados
#' }
#'
#' Set \code{options(googleAuthR.scopes.selected = c(https://api.curoverse.com/auth/arvados)}
#' Then run \code{googleAuthR::gar_auth()} to authenticate.
#' See \code{\link[googleAuthR]{gar_auth}} for details.
#'
#' @param uuid
#' @importFrom googleAuthR gar_api_generator
#' @export
workflows.destroy <- function(uuid) {
url <- sprintf("https://qr1hi.arvadosapi.com/arvados/v1/workflows/%s", uuid)
# arvados.workflows.destroy
f <- googleAuthR::gar_api_generator(url, "DELETE", data_parse_function = function(x) x)
f()
}
#' Gets a Link's metadata by UUID.
#'
#' Autogenerated via \code{\link[googleAuthR]{gar_create_api_skeleton}}
#'
#' @seealso \href{http://doc.arvados.org/api/index.html}{Google Documentation}
#'
#' @details
#' Authentication scopes used by this function are:
#' \itemize{
#' \item https://api.curoverse.com/auth/arvados
#' \item https://api.curoverse.com/auth/arvados.readonly
#' }
#'
#' Set \code{options(googleAuthR.scopes.selected = c(https://api.curoverse.com/auth/arvados, https://api.curoverse.com/auth/arvados.readonly)}
#' Then run \code{googleAuthR::gar_auth()} to authenticate.
#' See \code{\link[googleAuthR]{gar_auth}} for details.
#'
#' @param uuid The UUID of the Link in question
#' @importFrom googleAuthR gar_api_generator
#' @export
links.get <- function(uuid) {
url <- sprintf("https://qr1hi.arvadosapi.com/arvados/v1/links/%s", uuid)
# arvados.links.get
f <- googleAuthR::gar_api_generator(url, "GET", data_parse_function = function(x) x)
f()
}
#' List Links. The <code>list</code> method returns a <a href='/api/resources.html'>resource list</a> of matching Links. For example: <pre> { 'kind':'arvados#linkList', 'etag':'', 'self_link':'', 'next_page_token':'', 'next_link':'', 'items':[ ... ], 'items_available':745, '_profile':{ 'request_time':0.157236317 } </pre>
#'
#' Autogenerated via \code{\link[googleAuthR]{gar_create_api_skeleton}}
#'
#' @seealso \href{http://doc.arvados.org/api/index.html}{Google Documentation}
#'
#' @details
#' Authentication scopes used by this function are:
#' \itemize{
#' \item https://api.curoverse.com/auth/arvados
#' \item https://api.curoverse.com/auth/arvados.readonly
#' }
#'
#' Set \code{options(googleAuthR.scopes.selected = c(https://api.curoverse.com/auth/arvados, https://api.curoverse.com/auth/arvados.readonly)}
#' Then run \code{googleAuthR::gar_auth()} to authenticate.
#' See \code{\link[googleAuthR]{gar_auth}} for details.
#'
#' @param filters
#' @param where
#' @param order
#' @param select
#' @param distinct
#' @param limit
#' @param offset
#' @param count
#' @importFrom googleAuthR gar_api_generator
#' @export
links.list <- function(filters, where, order, select, distinct, limit, offset, count) {
url <- "https://qr1hi.arvadosapi.com/arvados/v1/links"
# arvados.links.list
pars = list(filters = filters, where = where, order = order, select = select,
distinct = distinct, limit = limit, offset = offset, count = count)
f <- googleAuthR::gar_api_generator(url, "GET", pars_args = rmNullObs(pars),
data_parse_function = function(x) x)
f()
}
#' Create a new Link.
#'
#' Autogenerated via \code{\link[googleAuthR]{gar_create_api_skeleton}}
#'
#' @seealso \href{http://doc.arvados.org/api/index.html}{Google Documentation}
#'
#' @details
#' Authentication scopes used by this function are:
#' \itemize{
#' \item https://api.curoverse.com/auth/arvados
#' }
#'
#' Set \code{options(googleAuthR.scopes.selected = c(https://api.curoverse.com/auth/arvados)}
#' Then run \code{googleAuthR::gar_auth()} to authenticate.
#' See \code{\link[googleAuthR]{gar_auth}} for details.
#'
#' @param The \link{} object to pass to this method
#' @param ensure_unique_name Adjust name to ensure uniqueness instead of returning an error on (owner_uuid, name) collision
#' @importFrom googleAuthR gar_api_generator
#' @family functions
#' @export
links.create <- function(NA. = NULL, ensure_unique_name) {
url <- "https://qr1hi.arvadosapi.com/arvados/v1/links"
# arvados.links.create
pars = list(ensure_unique_name = ensure_unique_name)
f <- googleAuthR::gar_api_generator(url, "POST", pars_args = rmNullObs(pars),
data_parse_function = function(x) x)
stopifnot(inherits(, "gar_"))
f(the_body = )
}
#' Update attributes of an existing Link.
#'
#' Autogenerated via \code{\link[googleAuthR]{gar_create_api_skeleton}}
#'
#' @seealso \href{http://doc.arvados.org/api/index.html}{Google Documentation}
#'
#' @details
#' Authentication scopes used by this function are:
#' \itemize{
#' \item https://api.curoverse.com/auth/arvados
#' }
#'
#' Set \code{options(googleAuthR.scopes.selected = c(https://api.curoverse.com/auth/arvados)}
#' Then run \code{googleAuthR::gar_auth()} to authenticate.
#' See \code{\link[googleAuthR]{gar_auth}} for details.
#'
#' @param The \link{} object to pass to this method
#' @param uuid The UUID of the Link in question
#' @importFrom googleAuthR gar_api_generator
#' @family functions
#' @export
links.update <- function(NA. = NULL, uuid) {
url <- sprintf("https://qr1hi.arvadosapi.com/arvados/v1/links/%s", uuid)
# arvados.links.update
f <- googleAuthR::gar_api_generator(url, "PUT", data_parse_function = function(x) x)
stopifnot(inherits(, "gar_"))
f(the_body = )
}
#' Delete an existing Link.
#'
#' Autogenerated via \code{\link[googleAuthR]{gar_create_api_skeleton}}
#'
#' @seealso \href{http://doc.arvados.org/api/index.html}{Google Documentation}
#'
#' @details
#' Authentication scopes used by this function are:
#' \itemize{
#' \item https://api.curoverse.com/auth/arvados
#' }
#'
#' Set \code{options(googleAuthR.scopes.selected = c(https://api.curoverse.com/auth/arvados)}
#' Then run \code{googleAuthR::gar_auth()} to authenticate.
#' See \code{\link[googleAuthR]{gar_auth}} for details.
#'
#' @param uuid The UUID of the Link in question
#' @importFrom googleAuthR gar_api_generator
#' @export
links.delete <- function(uuid) {
url <- sprintf("https://qr1hi.arvadosapi.com/arvados/v1/links/%s", uuid)
# arvados.links.delete
f <- googleAuthR::gar_api_generator(url, "DELETE", data_parse_function = function(x) x)
f()
}
#' List Links. The <code>list</code> method returns a <a href='/api/resources.html'>resource list</a> of matching Links. For example: <pre> { 'kind':'arvados#linkList', 'etag':'', 'self_link':'', 'next_page_token':'', 'next_link':'', 'items':[ ... ], 'items_available':745, '_profile':{ 'request_time':0.157236317 } </pre>
#'
#' Autogenerated via \code{\link[googleAuthR]{gar_create_api_skeleton}}
#'
#' @seealso \href{http://doc.arvados.org/api/index.html}{Google Documentation}
#'
#' @details
#' Authentication scopes used by this function are:
#' \itemize{
#' \item https://api.curoverse.com/auth/arvados
#' \item https://api.curoverse.com/auth/arvados.readonly
#' }
#'
#' Set \code{options(googleAuthR.scopes.selected = c(https://api.curoverse.com/auth/arvados, https://api.curoverse.com/auth/arvados.readonly)}
#' Then run \code{googleAuthR::gar_auth()} to authenticate.
#' See \code{\link[googleAuthR]{gar_auth}} for details.
#'
#' @param filters
#' @param where
#' @param order
#' @param select
#' @param distinct
#' @param limit
#' @param offset
#' @param count
#' @importFrom googleAuthR gar_api_generator
#' @export
links.list <- function(filters, where, order, select, distinct, limit, offset, count) {
url <- "https://qr1hi.arvadosapi.com/arvados/v1/links"
# arvados.links.list
pars = list(filters = filters, where = where, order = order, select = select,
distinct = distinct, limit = limit, offset = offset, count = count)
f <- googleAuthR::gar_api_generator(url, "GET", pars_args = rmNullObs(pars),
data_parse_function = function(x) x)
f()
}
#' show links
#'
#' Autogenerated via \code{\link[googleAuthR]{gar_create_api_skeleton}}
#'
#' @seealso \href{http://doc.arvados.org/api/index.html}{Google Documentation}
#'
#' @details
#' Authentication scopes used by this function are:
#' \itemize{
#' \item https://api.curoverse.com/auth/arvados
#' }
#'
#' Set \code{options(googleAuthR.scopes.selected = c(https://api.curoverse.com/auth/arvados)}
#' Then run \code{googleAuthR::gar_auth()} to authenticate.
#' See \code{\link[googleAuthR]{gar_auth}} for details.
#'
#' @param uuid
#' @importFrom googleAuthR gar_api_generator
#' @export
links.show <- function(uuid) {
url <- sprintf("https://qr1hi.arvadosapi.com/arvados/v1/links/%s", uuid)
# arvados.links.show
f <- googleAuthR::gar_api_generator(url, "GET", data_parse_function = function(x) x)
f()
}
#' destroy links
#'
#' Autogenerated via \code{\link[googleAuthR]{gar_create_api_skeleton}}
#'
#' @seealso \href{http://doc.arvados.org/api/index.html}{Google Documentation}
#'
#' @details
#' Authentication scopes used by this function are:
#' \itemize{
#' \item https://api.curoverse.com/auth/arvados
#' }
#'
#' Set \code{options(googleAuthR.scopes.selected = c(https://api.curoverse.com/auth/arvados)}
#' Then run \code{googleAuthR::gar_auth()} to authenticate.
#' See \code{\link[googleAuthR]{gar_auth}} for details.
#'
#' @param uuid
#' @importFrom googleAuthR gar_api_generator
#' @export
links.destroy <- function(uuid) {
url <- sprintf("https://qr1hi.arvadosapi.com/arvados/v1/links/%s", uuid)
# arvados.links.destroy
f <- googleAuthR::gar_api_generator(url, "DELETE", data_parse_function = function(x) x)
f()
}
#' get_permissions links
#'
#' Autogenerated via \code{\link[googleAuthR]{gar_create_api_skeleton}}
#'
#' @seealso \href{http://doc.arvados.org/api/index.html}{Google Documentation}
#'
#' @details
#' Authentication scopes used by this function are:
#' \itemize{
#' \item https://api.curoverse.com/auth/arvados
#' }
#'
#' Set \code{options(googleAuthR.scopes.selected = c(https://api.curoverse.com/auth/arvados)}
#' Then run \code{googleAuthR::gar_auth()} to authenticate.
#' See \code{\link[googleAuthR]{gar_auth}} for details.
#'
#' @param uuid
#' @importFrom googleAuthR gar_api_generator
#' @export
links.get_permissions <- function(uuid) {
url <- sprintf("https://qr1hi.arvadosapi.com/arvados/v1/permissions/%s", uuid)
# arvados.links.get_permissions
f <- googleAuthR::gar_api_generator(url, "GET", data_parse_function = function(x) x)
f()
}
#' Gets a Group's metadata by UUID.
#'
#' Autogenerated via \code{\link[googleAuthR]{gar_create_api_skeleton}}
#'
#' @seealso \href{http://doc.arvados.org/api/index.html}{Google Documentation}
#'
#' @details
#' Authentication scopes used by this function are:
#' \itemize{
#' \item https://api.curoverse.com/auth/arvados
#' \item https://api.curoverse.com/auth/arvados.readonly
#' }
#'
#' Set \code{options(googleAuthR.scopes.selected = c(https://api.curoverse.com/auth/arvados, https://api.curoverse.com/auth/arvados.readonly)}
#' Then run \code{googleAuthR::gar_auth()} to authenticate.
#' See \code{\link[googleAuthR]{gar_auth}} for details.
#'
#' @param uuid The UUID of the Group in question
#' @importFrom googleAuthR gar_api_generator
#' @export
groups.get <- function(uuid) {
url <- sprintf("https://qr1hi.arvadosapi.com/arvados/v1/groups/%s", uuid)
# arvados.groups.get
f <- googleAuthR::gar_api_generator(url, "GET", data_parse_function = function(x) x)
f()
}
#' List Groups. The <code>list</code> method returns a <a href='/api/resources.html'>resource list</a> of matching Groups. For example: <pre> { 'kind':'arvados#groupList', 'etag':'', 'self_link':'', 'next_page_token':'', 'next_link':'', 'items':[ ... ], 'items_available':745, '_profile':{ 'request_time':0.157236317 } </pre>
#'
#' Autogenerated via \code{\link[googleAuthR]{gar_create_api_skeleton}}
#'
#' @seealso \href{http://doc.arvados.org/api/index.html}{Google Documentation}
#'
#' @details
#' Authentication scopes used by this function are:
#' \itemize{
#' \item https://api.curoverse.com/auth/arvados
#' \item https://api.curoverse.com/auth/arvados.readonly
#' }
#'
#' Set \code{options(googleAuthR.scopes.selected = c(https://api.curoverse.com/auth/arvados, https://api.curoverse.com/auth/arvados.readonly)}
#' Then run \code{googleAuthR::gar_auth()} to authenticate.
#' See \code{\link[googleAuthR]{gar_auth}} for details.
#'
#' @param filters
#' @param where
#' @param order
#' @param select