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config.log
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This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
It was created by BamDeal configure 0.27, which was
generated by GNU Autoconf 2.69. Invocation command line was
$ ./configure
## --------- ##
## Platform. ##
## --------- ##
hostname = masterSrv
uname -m = x86_64
uname -r = 3.10.0-957.27.2.el7.x86_64
uname -s = Linux
uname -v = #1 SMP Mon Jul 29 17:46:05 UTC 2019
/usr/bin/uname -p = x86_64
/bin/uname -X = unknown
/bin/arch = x86_64
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo = unknown
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown
PATH: /home/BCadmin/03.Soft_ALL/gcc-6.4.0/bin
PATH: /data/storage05/BC_PUB/Software/01.Usr//bin
PATH: /home/BCadmin/perl5/bin
PATH: /usr/local/bin
PATH: /usr/bin
PATH: /usr/local/sbin
PATH: /usr/sbin
## ----------- ##
## Core tests. ##
## ----------- ##
configure:2413: checking for a BSD-compatible install
configure:2481: result: /usr/bin/install -c
configure:2492: checking whether build environment is sane
configure:2542: result: yes
configure:2683: checking for a thread-safe mkdir -p
configure:2722: result: /usr/bin/mkdir -p
configure:2735: checking for gawk
configure:2751: found /usr/bin/gawk
configure:2762: result: gawk
configure:2773: checking whether make sets $(MAKE)
configure:2795: result: yes
configure:2883: checking for gawk
configure:2910: result: gawk
configure:2979: checking for g++
configure:2995: found /home/BCadmin/03.Soft_ALL/gcc-6.4.0/bin/g++
configure:3006: result: g++
configure:3033: checking for C++ compiler version
configure:3042: g++ --version >&5
g++ (GCC) 6.4.0
Copyright (C) 2017 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
configure:3053: $? = 0
configure:3042: g++ -v >&5
Using built-in specs.
COLLECT_GCC=g++
COLLECT_LTO_WRAPPER=/data/storage05/BC_PUB/Software/03.Soft_ALL/gcc-6.4.0/libexec/gcc/x86_64-pc-linux-gnu/6.4.0/lto-wrapper
Target: x86_64-pc-linux-gnu
Configured with: ./configure --prefix=/data/storage05/BC_PUB/Software/03.Soft_ALL/gcc-6.4.0/ --enable-threads=posix --enable-languages=c,c++,fortran,go,objc,obj-c++,java --with-gmp=/data/storage05/BC_PUB/Software/01.Usr --with-mpc=/data/storage05/BC_PUB/Software/01.Usr --with-mpfr=/data/storage05/BC_PUB/Software/01.Usr --disable-checking --disable-multilib --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions--enable-gnu-unique-object --enable-java-awt=gtk --disable-dssi -enable-libgcj-multifile --enable-java-maintainer-mode --with-ppl --with-cloog --with-tune=generic
Thread model: posix
gcc version 6.4.0 (GCC)
configure:3053: $? = 0
configure:3042: g++ -V >&5
g++: error: unrecognized command line option '-V'
g++: fatal error: no input files
compilation terminated.
configure:3053: $? = 1
configure:3042: g++ -qversion >&5
g++: error: unrecognized command line option '-qversion'; did you mean '--version'?
g++: fatal error: no input files
compilation terminated.
configure:3053: $? = 1
configure:3073: checking whether the C++ compiler works
configure:3095: g++ -L/home/BCadmin/03.Soft_ALL/gcc-6.4.0/lib conftest.cpp >&5
configure:3099: $? = 0
configure:3147: result: yes
configure:3150: checking for C++ compiler default output file name
configure:3152: result: a.out
configure:3158: checking for suffix of executables
configure:3165: g++ -o conftest -L/home/BCadmin/03.Soft_ALL/gcc-6.4.0/lib conftest.cpp >&5
configure:3169: $? = 0
configure:3191: result:
configure:3213: checking whether we are cross compiling
configure:3221: g++ -o conftest -L/home/BCadmin/03.Soft_ALL/gcc-6.4.0/lib conftest.cpp >&5
configure:3225: $? = 0
configure:3232: ./conftest
configure:3236: $? = 0
configure:3251: result: no
configure:3256: checking for suffix of object files
configure:3278: g++ -c conftest.cpp >&5
configure:3282: $? = 0
configure:3303: result: o
configure:3307: checking whether we are using the GNU C++ compiler
configure:3326: g++ -c conftest.cpp >&5
configure:3326: $? = 0
configure:3335: result: yes
configure:3344: checking whether g++ accepts -g
configure:3364: g++ -c -g conftest.cpp >&5
configure:3364: $? = 0
configure:3405: result: yes
configure:3439: checking for style of include used by make
configure:3467: result: GNU
configure:3492: checking dependency style of g++
configure:3602: result: gcc3
configure:3671: checking for gcc
configure:3687: found /home/BCadmin/03.Soft_ALL/gcc-6.4.0/bin/gcc
configure:3698: result: gcc
configure:3729: checking for C compiler version
configure:3738: gcc --version >&5
gcc (GCC) 6.4.0
Copyright (C) 2017 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
configure:3749: $? = 0
configure:3738: gcc -v >&5
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/data/storage05/BC_PUB/Software/03.Soft_ALL/gcc-6.4.0/libexec/gcc/x86_64-pc-linux-gnu/6.4.0/lto-wrapper
Target: x86_64-pc-linux-gnu
Configured with: ./configure --prefix=/data/storage05/BC_PUB/Software/03.Soft_ALL/gcc-6.4.0/ --enable-threads=posix --enable-languages=c,c++,fortran,go,objc,obj-c++,java --with-gmp=/data/storage05/BC_PUB/Software/01.Usr --with-mpc=/data/storage05/BC_PUB/Software/01.Usr --with-mpfr=/data/storage05/BC_PUB/Software/01.Usr --disable-checking --disable-multilib --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions--enable-gnu-unique-object --enable-java-awt=gtk --disable-dssi -enable-libgcj-multifile --enable-java-maintainer-mode --with-ppl --with-cloog --with-tune=generic
Thread model: posix
gcc version 6.4.0 (GCC)
configure:3749: $? = 0
configure:3738: gcc -V >&5
gcc: error: unrecognized command line option '-V'
gcc: fatal error: no input files
compilation terminated.
configure:3749: $? = 1
configure:3738: gcc -qversion >&5
gcc: error: unrecognized command line option '-qversion'; did you mean '--version'?
gcc: fatal error: no input files
compilation terminated.
configure:3749: $? = 1
configure:3753: checking whether we are using the GNU C compiler
configure:3772: gcc -c -I/home/BCadmin/03.Soft_ALL/gcc-6.4.0/include conftest.c >&5
configure:3772: $? = 0
configure:3781: result: yes
configure:3790: checking whether gcc accepts -g
configure:3810: gcc -c -g conftest.c >&5
configure:3810: $? = 0
configure:3851: result: yes
configure:3868: checking for gcc option to accept ISO C89
configure:3931: gcc -c -I/home/BCadmin/03.Soft_ALL/gcc-6.4.0/include conftest.c >&5
configure:3931: $? = 0
configure:3944: result: none needed
configure:3966: checking dependency style of gcc
configure:4076: result: gcc3
configure:4096: checking how to run the C preprocessor
configure:4127: gcc -E conftest.c
configure:4127: $? = 0
configure:4141: gcc -E conftest.c
conftest.c:11:28: fatal error: ac_nonexistent.h: No such file or directory
#include <ac_nonexistent.h>
^
compilation terminated.
configure:4141: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "BamDeal"
| #define PACKAGE_TARNAME "bamdeal"
| #define PACKAGE_VERSION "0.27"
| #define PACKAGE_STRING "BamDeal 0.27"
| #define PACKAGE_BUGREPORT "[email protected]"
| #define PACKAGE_URL ""
| #define PACKAGE "BamDeal"
| #define VERSION "0.27"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:4166: result: gcc -E
configure:4186: gcc -E conftest.c
configure:4186: $? = 0
configure:4200: gcc -E conftest.c
conftest.c:11:28: fatal error: ac_nonexistent.h: No such file or directory
#include <ac_nonexistent.h>
^
compilation terminated.
configure:4200: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "BamDeal"
| #define PACKAGE_TARNAME "bamdeal"
| #define PACKAGE_VERSION "0.27"
| #define PACKAGE_STRING "BamDeal 0.27"
| #define PACKAGE_BUGREPORT "[email protected]"
| #define PACKAGE_URL ""
| #define PACKAGE "BamDeal"
| #define VERSION "0.27"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:4228: checking whether ln -s works
configure:4232: result: yes
configure:4239: checking whether make sets $(MAKE)
configure:4261: result: yes
configure:4313: checking for ranlib
configure:4329: found /usr/bin/ranlib
configure:4340: result: ranlib
configure:4366: checking for main in -lz
configure:4385: gcc -o conftest -I/home/BCadmin/03.Soft_ALL/gcc-6.4.0/include -L/home/BCadmin/03.Soft_ALL/gcc-6.4.0/lib conftest.c -lz >&5
configure:4385: $? = 0
configure:4394: result: yes
configure:4409: checking for main in -lhts
configure:4428: gcc -o conftest -I/home/BCadmin/03.Soft_ALL/gcc-6.4.0/include -L/home/BCadmin/03.Soft_ALL/gcc-6.4.0/lib conftest.c -lhts -lz >&5
/usr/bin/ld: cannot find -lhts
collect2: error: ld returned 1 exit status
configure:4428: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "BamDeal"
| #define PACKAGE_TARNAME "bamdeal"
| #define PACKAGE_VERSION "0.27"
| #define PACKAGE_STRING "BamDeal 0.27"
| #define PACKAGE_BUGREPORT "[email protected]"
| #define PACKAGE_URL ""
| #define PACKAGE "BamDeal"
| #define VERSION "0.27"
| #define HAVE_LIBZ 1
| /* end confdefs.h. */
|
|
| int
| main ()
| {
| return main ();
| ;
| return 0;
| }
configure:4437: result: no
configure:4447: error: You need Pre-install Library libhts samtools/htslib >= 1.12 to build BamDeal
## ---------------- ##
## Cache variables. ##
## ---------------- ##
ac_cv_c_compiler_gnu=yes
ac_cv_cxx_compiler_gnu=yes
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=set
ac_cv_env_CFLAGS_value=-I/home/BCadmin/03.Soft_ALL/gcc-6.4.0/include
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXX_set=
ac_cv_env_CXX_value=
ac_cv_env_LDFLAGS_set=set
ac_cv_env_LDFLAGS_value=-L/home/BCadmin/03.Soft_ALL/gcc-6.4.0/lib
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_lib_hts_main=no
ac_cv_lib_z_main=yes
ac_cv_objext=o
ac_cv_path_install='/usr/bin/install -c'
ac_cv_path_mkdir=/usr/bin/mkdir
ac_cv_prog_AWK=gawk
ac_cv_prog_CPP='gcc -E'
ac_cv_prog_ac_ct_CC=gcc
ac_cv_prog_ac_ct_CXX=g++
ac_cv_prog_ac_ct_RANLIB=ranlib
ac_cv_prog_cc_c89=
ac_cv_prog_cc_g=yes
ac_cv_prog_cxx_g=yes
ac_cv_prog_make_make_set=yes
am_cv_CC_dependencies_compiler_type=gcc3
am_cv_CXX_dependencies_compiler_type=gcc3
## ----------------- ##
## Output variables. ##
## ----------------- ##
ACLOCAL='${SHELL} /software/03.Soft_ALL/BamDeal-0.27/missing --run aclocal-1.11'
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='${SHELL} /software/03.Soft_ALL/BamDeal-0.27/missing --run tar'
AUTOCONF='${SHELL} /software/03.Soft_ALL/BamDeal-0.27/missing --run autoconf'
AUTOHEADER='${SHELL} /software/03.Soft_ALL/BamDeal-0.27/missing --run autoheader'
AUTOMAKE='${SHELL} /software/03.Soft_ALL/BamDeal-0.27/missing --run automake-1.11'
AWK='gawk'
CC='gcc'
CCDEPMODE='depmode=gcc3'
CFLAGS='-I/home/BCadmin/03.Soft_ALL/gcc-6.4.0/include'
CPP='gcc -E'
CPPFLAGS=''
CXX='g++'
CXXDEPMODE='depmode=gcc3'
CXXFLAGS='-g -O2'
CYGPATH_W='echo'
DEFS=''
DEPDIR='.deps'
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP=''
EXEEXT=''
GREP=''
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
LDFLAGS='-L/home/BCadmin/03.Soft_ALL/gcc-6.4.0/lib'
LIBOBJS=''
LIBS='-lz '
LN_S='ln -s'
LTLIBOBJS=''
MAKEINFO='${SHELL} /software/03.Soft_ALL/BamDeal-0.27/missing --run makeinfo'
MKDIR_P='/usr/bin/mkdir -p'
OBJEXT='o'
PACKAGE='BamDeal'
PACKAGE_BUGREPORT='[email protected]'
PACKAGE_NAME='BamDeal'
PACKAGE_STRING='BamDeal 0.27'
PACKAGE_TARNAME='bamdeal'
PACKAGE_URL=''
PACKAGE_VERSION='0.27'
PATH_SEPARATOR=':'
RANLIB='ranlib'
SET_MAKE=''
SHELL='/bin/sh'
STRIP=''
VERSION='0.27'
ac_ct_CC='gcc'
ac_ct_CXX='g++'
am__EXEEXT_FALSE=''
am__EXEEXT_TRUE=''
am__fastdepCC_FALSE='#'
am__fastdepCC_TRUE=''
am__fastdepCXX_FALSE='#'
am__fastdepCXX_TRUE=''
am__include='include'
am__isrc=''
am__leading_dot='.'
am__quote=''
am__tar='${AMTAR} chof - "$$tardir"'
am__untar='${AMTAR} xf -'
bindir='${exec_prefix}/bin'
build_alias=''
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix='NONE'
host_alias=''
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /software/03.Soft_ALL/BamDeal-0.27/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='/usr/bin/mkdir -p'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='NONE'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='${prefix}/etc'
target_alias=''
## ----------- ##
## confdefs.h. ##
## ----------- ##
/* confdefs.h */
#define PACKAGE_NAME "BamDeal"
#define PACKAGE_TARNAME "bamdeal"
#define PACKAGE_VERSION "0.27"
#define PACKAGE_STRING "BamDeal 0.27"
#define PACKAGE_BUGREPORT "[email protected]"
#define PACKAGE_URL ""
#define PACKAGE "BamDeal"
#define VERSION "0.27"
#define HAVE_LIBZ 1
configure: exit 1