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sync #1

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JVThomas and others added 29 commits August 22, 2023 13:19
@JVThomas @aednichols
WX-1174 Adjust NIO Copy functionality (#7207)
f64b3b9 
Co-authored-by: Adam Nichols <[email protected]>
@THWiseman
[WX-1168] TES Log Paths (#7210)
aea7343
@jgainerdewar
WX-1264 Don't expire an unexpirable filesystem (#7216)
33e991f
@THWiseman
[WX-495] DRS Parallel Downloads (#7214)
a290e6d
@jgainerdewar
WX-1225 Print TES error messages to job logger (#7220)
5456e40
@jgainerdewar @cjllanwarne
WX-1217 Workflow completion callback (#7213)
660f6e3 
Co-authored-by: Chris Llanwarne <[email protected]>
@salonishah11 @cjllanwarne
[WM-2199] Changeset for modifying ownership of tables for WORKFLOWS a…
2fec07b 
…pp (#7218)

Co-authored-by: Chris Llanwarne <[email protected]>
@THWiseman
[WX-1234] Update CHANGELOG.md (#7227)
a83ec6e 
Merging past CI since this is doc only.
@cjllanwarne @dvoet
WM-2252: Configurable metadata write role (#7225)
fc9e3cc 
Co-authored-by: dvoet <[email protected]>
@THWiseman
Update cromwell version from 86 to 87
d967bcd
@JVThomas
WX-1282 Update failedJobs Query to use lo_get instead of INNER JOIN…
c7b043b 
… against pg_largeobject (#7228)
@THWiseman @aednichols
[WX-1234] Update Release Process with Docker Instructions (#7231)
2634f2f 
Co-authored-by: Adam Nichols <[email protected]>
@cjllanwarne
WM-2294: Allow role-setter action to run on change (#7233)
4289ec1
@cjllanwarne
WM-2296: Callback should supply fully qualified output names (#7234)
c4e7566
@THWiseman
[WX-499] DRS Parallel Downloads Follow-up (#7229)
b6aae14
@dspeck1 @aednichols
WX-1318 gcp batch: Add GPU driver install (#7235)
aeacb3a 
Co-authored-by: Adam Nichols <[email protected]>
@jgainerdewar
WX-1232 Include useful workflow ids in TES tags (#7221)
c9d4ce4
@JVThomas @jgainerdewar
WX-1307 Azure E2E test (#7239)
4d16f01 
Co-authored-by: Janet Gainer-Dewar <[email protected]>
@dspeck1 @aednichols
WX-1340 GCP Batch: Mount with extra colon issue and multiple zones su…
5bc7ac3 
…pport (#7240)

Co-authored-by: Adam Nichols <[email protected]>
@aednichols
WX-1339 Make throwExceptionOnExecuteError false for PAPI aborts (#7245
e880371 
)
@jgainerdewar
WX-1338 Fix cron invocation of E2E test (#7244)
74de9e3
@jgainerdewar
WX-1341 Better logging when a runner stops picking up new workflows (#…
110ca3e 
…7246)
@THWiseman @aednichols
[WX-1260] Acquire sas token from task runner (#7241)
2a93f28 
Co-authored-by: Adam Nichols <[email protected]>
@THWiseman
[WX-1183] Ice Lake (#7252)
9b7ad98
@aednichols
WX-1333 Improve logging visibility for load management (#7253)
14c3184
@THWiseman
[WX-1391] Fix Bash Bug (#7326)
84b4480
@THWiseman
[WX-1393] Add Content Length to Curl request (#7328)
408bc29
@THWiseman
[WX-1346] Scalafmt (#7257)
9b98728
@aednichols
WX-1351 Speed up Centaur Horicromtal PapiV2 Beta (#7329)
beb86bd
lucymcnatt and others added 30 commits December 10, 2024 10:08
@lucymcnatt @aednichols
Revert "[AN-146] Emit VM cost for GCP Batch" (#7669)
860429b 
Co-authored-by: Adam Nichols <[email protected]>
@lucymcnatt
Revert "Revert "[AN-146] Emit VM cost for GCP Batch"" (#7671)
38245ca
@aednichols
AN-140 Metadata index for cost capping (#7567)
8a2d781
@jgainerdewar
AN-300 Fall back to large Docker image size if we can't find a real o…
95d2d53 
…ne (#7673)
@bennettn4 @BMurri @jsaun
TOAZ-372 Support for deployment in Azure Government Cloud (Cromwell) (#…
920759a 
…7670)

Co-authored-by: Blair L Murri <[email protected]>
Co-authored-by: Jonathon Saunders <[email protected]>
@jgainerdewar
AN-349 AN-358 Fix cost status (#7676)
83c69a3
@aednichols
AN-236 Remove PAPIv1 auth file support (#7678)
7818492
@salonishah11
[AN-286] Fixes deadlock issue in GROUP_METRICS_ENTRY table (#7677)
a00a190
@jgainerdewar
AN-360 Fix slurm CI (#7680)
a77792a
@claymcleod
docs: remove the oliver repository (#7681)
4614c07
@lucymcnatt
[AN-333] Prevent infinite DRS download retries (#7679)
2c134ec
@LizBaldo @aednichols
[AN-393] Add waiting for quota to quota messages (#7686)
5a7f7f8 
Co-authored-by: Adam Nichols <[email protected]>
@dspeck1
WX-926 GCP Batch Backend Executor Test Fix (#7588)
ab3f9b5
@mcovarr
Fix preemptibles and maxRetries on GCP Batch [AN-274] [AN-377] (#7684)
648f65a
@mcovarr
Handle very quick preemptions correctly on GCP Batch [AN-274] (#7688)
e5950a5
@lucymcnatt
[AN-371] Add logs path to batch metadata (#7689)
71f5760
@jgainerdewar @aednichols
AN-380 Make call cache hashing strategy configurable per filesystem a…
b652a9e 
…nd backend (#7683)

Co-authored-by: Adam Nichols <[email protected]>
@aednichols
AN-415 Remove unused tests referencing gs://broad-public-datasets (#…
03fa19f 
…7692)
@jgainerdewar
AN-354 Initial checkin of Release Community Cromwell GHA (#7691)
e3a4740
@jgainerdewar
AN-354 Clean up v88 release notes (#7694)
305765f
@lucymcnatt
[AN-142] Adding cost centaur test (#7685)
f35ab8f 
Also removes old mysql test for versions < 8.0
@LizBaldo
[AN-339] Upgrade AsyncHttpClient to 2.12.4 (#7693)
b2ecb61
@aednichols
AN-415 Eliminate reliance on test data from `gs://broad-public-datase…
47bbf93 
…ts` (#7696)
@broadbot
test commit
700377b
@broadbot
test commit
8f5429c
@broadbot
Update cromwell version from 88 to 89
03fe216
@jgainerdewar
Update cromwell version from 88 to 89 for real
2263db9
@jgainerdewar
AN-354 Release GHA fixes (#7698)
0e7dba0
@jgainerdewar
AN-354 Remove old release process and docs (#7695)
065b5d0
@jgainerdewar
AN-354 More better removal of old release process (#7699)
7898c01
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