Cargo.toml

[package]
name = "segpe"
version = "0.1.14"
edition = "2021"
authors = ["BENM(Binxiao) Feng <binxiaofeng@gmail.com>"]
rust-version = "1.77.0"
description = "a simple program for classifing and separating PE FASTQ after removing adapters via adapter-index seq"
keywords = ["fasta", "fa", "fastq", "fq", "adapter", "index", "seed", "fmindex", "cli", "sequence", "bio"]
categories = ["algorithms", "hardware-support", "science", "text-processing"]
readme = "README.md"
license = "MIT"

# See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html
[package.metadata.docs.rs]
# features = ["simd_neon"]
# Intel x86 change to 
features = ["simd_avx2"]

[features]
# Enable SSE2
simd_sse2 = []
# Enable AVX2
simd_avx2 = []
# Enable WASM SIMD
simd_wasm = []
# Enable Neon
simd_neon = []

# No SIMD
no_simd = []

# Print lots of debug information
debug = ["debug_size"]
# Print only the final block sizes
debug_size = []
# Prepare code for analysis by llvm-mca
mca = []

[dependencies]
regex = "1.10.3"
memmap2 = "0.9.4"
# fastq = "0.6.0"
crossbeam = "0.8.4"
crossbeam-channel = "0.5.12"
bio = "1.6.0"
fastq = "0.6.0"
needletail = "0.5.1"
clap = { version = "4.5.4", features = ["derive"] }
glob = "0.3.1"
futures = "0.3.30"
tokio = { version = "1.37.0", features = ["full"] }
flate2 = "1.0.28"
env_logger = "0.11.3"
log = "0.4.21"

# Intel x86 change to 
[target.'cfg(target_arch = "x86_64")'.dependencies]
block-aligner = { version = "0.5", features = ["simd_avx2"] }