slurm error

[smilesun]

No SLURM account given, trying to guess.
Guessed SLURM account: aih
No partition was given for rule 'generate_data', and unable to find a default partition. Trying to submit without partition informati
on. You may want to invoke snakemake with --default-resources 'slurm_partition='.
WorkflowError:
SLURM sbatch failed. The error message was sbatch: error: Batch job submission failed: No partition specified or system default parti
tion

[smilesun]

@Alex-Markham

[smilesun]

Now the erros is

No rule to produce --cluster=sbatch --partition=cpu_p --qos=cpu_normal --nice=10000 -t 24:00:00 -c 2 --mem=10G (if you use input functions make sure that they don't raise unexpected exceptio
ns).

[Alex-Markham]

can you push your changes so I can see the bash script being run? My guess is that you're using quotes, something like "--cluster=sbatch --partition=cpu_p --qos=cpu_normal --nice=10000 -t 24:00:00 -c 2 --mem=10G", so snakemake is interpreting it as a path for a file it should produce. Try removing the quotes and/or ordering things differently in the command (or push the changes and I can change the command to something I think will work)