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environment.yml
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name: NLR
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- argtable2=2.13=h14c3975_1001
- bedtools=2.30.0=h468198e_3
- blast=2.5.0=hc0b0e79_3
- boost=1.80.0=py37h48bf904_1
- boost-cpp=1.80.0=h75c5d50_0
- bzip2=1.0.8=h7f98852_4
- c-ares=1.18.1=h7f98852_0
- ca-certificates=2022.9.24=ha878542_0
- clustalo=1.2.4=h87f3376_5
- htslib=1.11=hd3b49d5_2
- icu=70.1=h27087fc_0
- keyutils=1.6.1=h166bdaf_0
- krb5=1.19.3=h3790be6_0
- ld_impl_linux-64=2.39=hcc3a1bd_1
- libblas=3.9.0=16_linux64_openblas
- libcblas=3.9.0=16_linux64_openblas
- libcurl=7.86.0=h7bff187_1
- libdeflate=1.7=h7f98852_5
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libffi=3.4.2=h7f98852_5
- libgcc=7.2.0=h69d50b8_2
- libgcc-ng=12.2.0=h65d4601_19
- libgfortran-ng=12.2.0=h69a702a_19
- libgfortran5=12.2.0=h337968e_19
- libgomp=12.2.0=h65d4601_19
- liblapack=3.9.0=16_linux64_openblas
- libnghttp2=1.47.0=hdcd2b5c_1
- libnsl=2.0.0=h7f98852_0
- libopenblas=0.3.21=pthreads_h78a6416_3
- libssh2=1.10.0=haa6b8db_3
- libstdcxx-ng=12.2.0=h46fd767_19
- libzlib=1.2.13=h166bdaf_4
- ncurses=6.2=h58526e2_4
- numpy=1.21.6=py37h976b520_0
- openssl=1.1.1s=h166bdaf_0
- perl=5.22.2.1=0
- perl-bioperl=1.6.924=2
- perl-threaded=5.32.1=hdfd78af_1
- pip=22.3.1=pyhd8ed1ab_0
- python=3.7.12=hb7a2778_100_cpython
- python_abi=3.7=3_cp37m
- readline=8.1=h46c0cb4_0
- samtools=1.11=h6270b1f_0
- seqkit=2.3.1=h9ee0642_0
- setuptools=65.5.1=pyhd8ed1ab_0
- sqlite=3.37.0=h9cd32fc_0
- tk=8.6.12=h27826a3_0
- wheel=0.38.4=pyhd8ed1ab_0
- xz=5.2.6=h166bdaf_0
- zlib=1.2.13=h166bdaf_4
- zstd=1.5.2=h6239696_4
- pip:
- appdirs==1.4.4
- attrs==22.1.0
- certifi==2022.9.24
- charset-normalizer==2.1.1
- configargparse==1.5.3
- connection-pool==0.0.3
- datrie==0.8.2
- docutils==0.19
- dpath==2.1.1
- fastjsonschema==2.16.2
- gitdb==4.0.10
- gitpython==3.1.29
- idna==3.4
- importlib-metadata==5.1.0
- importlib-resources==5.10.0
- jinja2==3.1.2
- jsonschema==4.17.3
- jupyter-core==4.12.0
- markupsafe==2.1.1
- nbformat==5.7.0
- pkgutil-resolve-name==1.3.10
- plac==1.3.5
- psutil==5.9.4
- pulp==2.7.0
- pyrsistent==0.19.2
- pyyaml==6.0
- requests==2.28.1
- reretry==0.11.1
- smart-open==6.2.0
- smmap==5.0.0
- snakemake==7.18.2
- stopit==1.1.2
- tabulate==0.9.0
- throttler==1.2.2
- toposort==1.7
- traitlets==5.6.0
- typing-extensions==4.4.0
- urllib3==1.26.13
- wrapt==1.14.1
- yte==1.5.1
- zipp==3.11.0