group_humann2_uniref_abundances_to_GO_download_datasets.sh tries to access removed bitbucket files

[jj-umn]

Humann seems to have moved from bitbucket to GitHub so
wget https://bitbucket.org/biobakery/humann2/raw/d1ac153083d48a5384e3b3d3597b9e36b1a4606e/humann2/data/misc/map_infogo1000_uniref50.txt.gz
fails.

Is correct URL now: https://github.com/biobakery/humann/raw/master/humann/data/misc/map_go_uniref90.txt.gz ?

[jj-umn]

I meant URL: https://github.com/biobakery/humann/blob/master/humann/data/misc/map_infogo1000_uniref50.txt.gz

[bernt-matthias]

Also stumbled over this one. I think one should not rely on the master branch but download a specific release .. which should be the same as the humann version used in the bioconda recipe (which then needs to be pinned).

[bernt-matthias]

Seems that the data has been removed here: biobakery/humann@228935a

The last commit with the data is here:
https://github.com/biobakery/humann/blob/1bb2639903be9a748c2e2e6f5287a48c3a524cc9/humann/data/misc/map_infogo1000_uniref50.txt.gz